Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xenopus_20laevis_20[refseq_20GCF_5F001663975.1_202016-08-09] 108,033 sequences; 2,718,433,805 total letters Query= NC_024696.1 Length=180800 Score E Sequences producing significant alignments: (Bits) Value seq6 131 2e-25 seq5 123 3e-23 >seq6 Length=120483113 Score = 131 bits (144), Expect = 2e-25 Identities = 233/336 (69%), Gaps = 8/336 (2%) Strand=Plus/Minus Query 162643 ACCATCTCTAGATTGGTCTTAAGGGGAAAGTCGGTGCCGCAGAGATTAATAACATATTTC 162702 |||||||| | || ||||| | |||||||| | || || |||||| | ||||||| Sbjct 55921131 ACCATCTCCACGTTAGTCTTCAATGGAAAGTCTGCTCCACACGTATTAATGAGATATTTC 55921072 Query 162703 CACTTAACGCTGAGTCCGTA-CAGATCCTGTAGACAGTTCAGATCGGCCTGGACGCGACT 162761 || | ||| || || | || || | | ||||| |||||||| || || | | Sbjct 55921071 CATTGCACGTTGC-TCTTCAGCAAGTCTTCCATGCAGTTGAGATCGGCTTGAACCCTCCG 55921013 Query 162762 CCACGACGCGTACACGACGCTCTCCAACCTAGTGGCGACAAAGACATTGTCGAAACACGA 162821 ||| || ||||| || || || |||| | | | || ||||| ||||||||||| || || Sbjct 55921012 CCATGATGCGTAGACCACACTTTCCAGCGTCGATGCCACAAACACATTGTCGAAGCAAGA 55920953 Query 162822 AACTATCCCCATCACGGC---CAGTGAGAACATCGGGTCCGCTTTCCTATCTACGTGTAC 162878 | || || ||||||| ||| || | ||| | ||| |||| ||||| || Sbjct 55920952 AGTGATGGCCCTCACGGCTTGCAGAAAGCTCTCTGGGGAC---TTCTTATCCACGTGAAC 55920896 Query 162879 GCAGTATAGATTCTGAGGGGCGTAGATGGCCCTCAGTAATCTCTCGAACATCTCTATCTT 162938 ||| || | |||||| |||| ||| | || ||||| | || ||||||||||| || || Sbjct 55920895 GCAATAAATATTCTGGGGGGTGTAAACAGCTCTCAGAAGCCTTTCGAACATCTCAATATT 55920836 Query 162939 ATGGTGTACCACGATAGAATACGCTATGGGGAACTC 162974 | ||| | ||| |||||||| || | |||||| || Sbjct 55920835 GTCGTGGATCACCATAGAATAAGCAACGGGGAAGTC 55920800 >seq5 Length=144167370 Score = 123 bits (136), Expect = 3e-23 Identities = 230/334 (69%), Gaps = 4/334 (1%) Strand=Plus/Plus Query 162643 ACCATCTCTAGATTGGTCTTAAGGGGAAAGTCGGTGCCGCAGAGATTAATAACATATTTC 162702 |||||||| ||| ||||| | |||||||||||| || || |||||| | |||| || Sbjct 86633853 ACCATCTCAGCATTAGTCTTTATGGGAAAGTCGGTTCCACACGTATTAATGAGATATCTC 86633912 Query 162703 CACTTAACGCTGAGTCCGTACAGATCCTGTAGACAGTTCAGATCGGCCTGGACGCGACTC 162762 || | ||| || | || || | | ||||| |||||||| || || | | | Sbjct 86633913 CATTGTACGTTGCTTTGCAGCAAGTCTTCCATGCAGTTTAGATCGGCTTGAACCCTCCGC 86633972 Query 162763 CACGACGCGTACACGACGCTCTCCAACCTAGTGGCGACAAAGACATTGTCGAAACACGAA 162822 || || ||||| || ||||| |||| | | | || ||||| ||||||||||| || ||| Sbjct 86633973 CATGATGCGTAGACCACGCTTTCCAGCTTTGATGCCACAAACACATTGTCGAAGCAAGAA 86634032 Query 162823 ACTATCCCCATCACGGCCAG-TGAGAAC-ATCGGGTCCGCTTTCCTATCTACGTGTACGC 162880 || | || | || | ||| | | || || | ||| |||| ||||| || | Sbjct 86634033 GTGATGGCTCTCGCCGCTTGCTGAAAGCTTTCTGG--AGACTTCTTATCCACGTGAACAC 86634090 Query 162881 AGTATAGATTCTGAGGGGCGTAGATGGCCCTCAGTAATCTCTCGAACATCTCTATCTTAT 162940 | || | ||| || |||| ||| | || |||| | || ||||||||||| || || | Sbjct 86634091 AATAAATATTATGGGGGGTGTAAACAGCTCTCAAAAGCCTTTCGAACATCTCGATATTGT 86634150 Query 162941 GGTGTACCACGATAGAATACGCTATGGGGAACTC 162974 ||| | ||| |||||||| || |||||||| || Sbjct 86634151 CGTGGATCACCATAGAATAAGCAATGGGGAAATC 86634184 Score = 98.7 bits (108), Expect = 1e-15 Identities = 217/321 (68%), Gaps = 6/321 (2%) Strand=Plus/Plus Query 162654 ATTGGTCTTAAGGGGAAAGTCGGTGCCGCAGAGATTAATAACATATTTCCACTTAACGCT 162713 ||||||||| | || ||||| ||||| || ||| | || ||||||||| || | Sbjct 86618466 ATTGGTCTTTAATGGGAAGTCTGTGCCACACGTATTTAAAAGGTATTTCCACAATACATT 86618525 Query 162714 GAGTCCGTA-CAGATCCTGTAGACAGTTCAGATCGGCCTGGACGCGACTCCACGACGCGT 162772 | || | | || ||||| | ||||||||| || || ||||| | ||| | || | Sbjct 86618526 GC-TCTGCAGCAAATCCTCCATACAGTTCAGGTCTGCTTGGACTCTTGGCCAGGCAGCAT 86618584 Query 162773 ACACGACGCTCTCCAACCTAGTGGCGACAAAGACATTGTCGAAACACGAAACTATCCCCA 162832 | || || || ||||| | | || | ||| ||||| || || || || || | | Sbjct 86618585 AGACCACACTGACCAACTTGGATGCAATAAATACATTATCAAAGCAAGAGGTAATGGCGA 86618644 Query 162833 TCACGGCCAGTGAGAA--CATCGGGTCCGCTTTCCTATCTACGTGTACGCAGTATAGATT 162890 |||| ||| || || | || || ||| ||| || || || ||||| | || Sbjct 86618645 TCACTGCCTTCTTAAATGCAGCCGG--CGATTTTTCATCCACATGAACACAGTAAATGTT 86618702 Query 162891 CTGAGGGGCGTAGATGGCCCTCAGTAATCTCTCGAACATCTCTATCTTATGGTGTACCAC 162950 ||||||||| || || | | ||| | || ||||||||||| ||||| | ||||| || Sbjct 86618703 CTGAGGGGCATAAATTGTTCGCAGCAGCCTTTCGAACATCTCAATCTTTTCGTGTATAAC 86618762 Query 162951 GATAGAATACGCTATGGGGAA 162971 |||||||| || |||||||| Sbjct 86618763 CATAGAATAGGCAATGGGGAA 86618783 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 577650878196800