Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xenopus_20laevis_20[refseq_20GCF_5F001663975.1_202016-08-09] 108,033 sequences; 2,718,433,805 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq9 86.0 1e-11 seq4 84.2 5e-11 >seq9 Length=159361991 Score = 86.0 bits (94), Expect = 1e-11 Identities = 101/136 (74%), Gaps = 2/136 (1%) Strand=Plus/Plus Query 131864 GTAGCTTTTGCTTGTGTTGAAGGTATATTCTTTTCAGGTGCTTTCTGTGCTATCTTTTGG 131923 || || |||||| ||||||||| || ||||| || ||| | || | || |||||| Sbjct 138027301 GTGGCATTTGCTGCTGTTGAAGGGATCTTCTTCTCCGGTTCATTTGCATCCATTTTTTGG 138027360 Query 131924 CTTAAGAAGCGTGGATTGATGCCTGGACTCTCATTGTCCAATCAATTCATCTCGAGAGAT 131983 || ||||| |||||| |||||||||||||| | || || ||| || | || |||||| Sbjct 138027361 CTGAAGAAACGTGGACTGATGCCTGGACTCACTTTCTCTAATGAACTTATTAGCAGAGAT 138027420 Query 131984 GAAGCA--TTGCATAC 131997 |||| | ||| |||| Sbjct 138027421 GAAGTAAGTTGGATAC 138027436 >seq4 Length=159726490 Score = 84.2 bits (92), Expect = 5e-11 Identities = 102/139 (73%), Gaps = 0/139 (0%) Strand=Plus/Minus Query 110755 CATTTGCTATCTATCTCGAACCTTGGCATTCAGATATATTTGAATTCTTAGAACTTCGTA 110814 ||||||| || || || ||||||||||||| ||| | ||||||||| | || || | Sbjct 158380895 CATTTGCCATATACCTGGAACCTTGGCATTATGATGTGTTTGAATTCCTGGACCTAAAAA 158380836 Query 110815 AAAATCAAGGATTTGAAGAACAAAGAGCACGTGATTTATTTTATGCAATGTGGATTTCAG 110874 | ||| ||| || || || ||||| | ||| |||| ||||| |||||||| | | Sbjct 158380835 AGAATACTGGAAAGGAGGAGCAGAGAGCCAGGGATCTATTCTATGCCATGTGGATACCGG 158380776 Query 110875 ATTTATTCATGAAACGTGT 110893 || | || ||||||||||| Sbjct 158380775 ATCTCTTTATGAAACGTGT 158380757 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1185170045988713