Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xenopus_20laevis_20[refseq_20GCF_5F001663975.1_202016-08-09] 108,033 sequences; 2,718,433,805 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq1 96.9 8e-15 seq3 89.7 1e-12 >seq1 Length=219802468 Score = 96.9 bits (106), Expect = 8e-15 Identities = 148/210 (70%), Gaps = 6/210 (3%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGA---AAGTTCT 206229 ||||||||| || || || ||||| || || || ||| | || ||||| |||| Sbjct 160683852 CAGATATTTGTGAAGACCCTGACAGGGAAGACAATTACTCTTGAGGTGGAGCCAAGT--- 160683908 Query 206230 GACACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCT 206289 ||||| | || |||||| ||| || ||||| |||||||| ||| || ||| Sbjct 160683909 GACACTATTGAGAATGTAAAGGCAAAAATCCAAGACAAAGAAGGTATTCCCCCTGACCAG 160683968 Query 206290 CAAAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAAC 206349 || ||| | || || || || |||||| |||||||||| || || || | || |||||| Sbjct 160683969 CAGAGATTGATTTTTGCTGGTAAGCAGCTGGAAGATGGCAGAACCCTGTCAGACTACAAC 160684028 Query 206350 GTCCAGAAAGAGTCTACTCTTCACCTTGTT 206379 | ||||||||||| || | ||| | ||| Sbjct 160684029 ATTCAGAAAGAGTCCACCTTGCACTTAGTT 160684058 Score = 89.7 bits (98), Expect = 1e-12 Identities = 146/208 (70%), Gaps = 2/208 (1%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 || |||||| ||| || | || || ||||| || ||| | ||||| ||| |||| Sbjct 160684764 CAAATATTTGTCAAGACCTTAACTGGTAAAACAATTACTCTTGAAGTTGAACCAAGTGAC 160684823 Query 206233 ACAGTCGAATCAGTAAA-GCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCA 206291 ||| | ||| ||||| |||||| || ||||| |||||||| ||| || ||| || Sbjct 160684824 ACAATTGAAAACGTAAAAGCAAAA-ATCCAAGACAAAGAAGGCATTCCCCCTGACCAGCA 160684882 Query 206292 AAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGT 206351 ||| | || || || || ||||| | |||||||| || || || | || ||||| | Sbjct 160684883 GAGATTGATTTTTGCTGGTAAGCAACTAGAAGATGGCAGAACCCTGTCTGACTACAATAT 160684942 Query 206352 CCAGAAAGAGTCTACTCTTCACCTTGTT 206379 ||||||||||| || | ||| | ||| Sbjct 160684943 TCAGAAAGAGTCAACCTTGCACTTAGTT 160684970 >seq3 Length=181146889 Score = 89.7 bits (98), Expect = 1e-12 Identities = 143/202 (71%), Gaps = 10/202 (5%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGA---AAGTTCT 206229 ||||| ||| ||||| | || || || || || || |||| || || |||| Sbjct 29378676 CAGATCTTTGTAAAAACTTTGACTGGCAAGACCATTACCCTGGAGGTAGAGTCAAGT--- 29378620 Query 206230 GACACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCT 206289 ||||| | ||| || || |||||||||||| |||||||| ||| || ||| Sbjct 29378619 GACACCATAGAAAATGTGAAATCAAAGATTCAAGACAAAGAAGGCATTCCTCCAGACCAA 29378560 Query 206290 CAAAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGAC--TTTGGCCGATTACA 206347 ||||| | ||||| ||||| |||||| |||||||||| | || |||| || |||| Sbjct 29378559 CAAAGGTTGATCTTTGCCGGCAAGCAGCTGGAAGATGGTCGCACCCTTTGT--GACTACA 29378502 Query 206348 ACGTCCAGAAAGAGTCTACTCT 206369 | |||||||||||||||| || Sbjct 29378501 ATATCCAGAAAGAGTCTACCCT 29378480 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1180184955779393