Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xenopus_20laevis_20[refseq_20GCF_5F001663975.1_202016-08-09] 108,033 sequences; 2,718,433,805 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq3 113 4e-20 seq2 113 4e-20 seq1 91.5 1e-13 >seq3 Length=181146889 Score = 113 bits (124), Expect = 4e-20 Identities = 142/195 (73%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 || || || || || |||||||| | | ||| ||| |||||| ||||| || || | | Sbjct 29377063 GATTCCTTCTGGATATTGTAGTCACAAAGGGTGCGCCCATCTTCCAGCTGCTTGCCAGCA 29377122 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 |||| | | |||||| |||||||| |||||||||||||| ||| ||| ||||| Sbjct 29377123 AAGATCAACCTCTGTTGGTCTGGAGGAATGCCTTCTTTATCTTGAATCTTTGATTTCACG 29377182 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | ||| | || || | ||||| || || | || | || || ||||||| ||||||| Sbjct 29377183 TTTTCTATGGTGTCACTTGGCTCTACCTCTAGGGTAATGGTCTTGCCAGTCAAAGTTTTT 29377242 Query 132110 ATGAAAATCTGCATG 132124 | ||| ||||||||| Sbjct 29377243 ACGAAGATCTGCATG 29377257 Score = 104 bits (114), Expect = 2e-17 Identities = 140/195 (72%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 |||||||| || || |||||||| | | ||| || |||||| ||||| || |||| | Sbjct 29378486 GACTCTTTCTGGATATTGTAGTCACAAAGGGTGCGACCATCTTCCAGCTGCTTGCCGGCA 29378545 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 |||| | | ||||| |||||||| ||||||||||| || ||| ||| ||||| Sbjct 29378546 AAGATCAACCTTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATCTTTGATTTCACA 29378605 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | ||| | || || | | ||| || || | || | || || ||||||| ||||||| Sbjct 29378606 TTTTCTATGGTGTCACTTGACTCTACCTCCAGGGTAATGGTCTTGCCAGTCAAAGTTTTT 29378665 Query 132110 ATGAAAATCTGCATG 132124 | || ||||||||| Sbjct 29378666 ACAAAGATCTGCATG 29378680 Score = 98.7 bits (108), Expect = 9e-16 Identities = 138/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 || || || || || |||||||| | | || || |||||| ||||| || |||| | Sbjct 29378714 GATTCCTTCTGGATATTGTAGTCACAAAGCGTGCGGCCATCTTCCAGCTGCTTGCCGGCA 29378773 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 |||| | | |||||| |||||||| ||||||||||| || ||| ||| ||||| Sbjct 29378774 AAGATCAACCTCTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATCTTTGATTTCACG 29378833 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | ||| | || || | ||||| || || | || | || || |||||||| |||||| Sbjct 29378834 TTTTCTATGGTGTCACTTGGCTCTACCTCCAGGGTAATGGTCTTGCCAGTCAGGGTTTTT 29378893 Query 132110 ATGAAAATCTGCAT 132123 | || |||||||| Sbjct 29378894 ACAAAGATCTGCAT 29378907 Score = 89.7 bits (98), Expect = 5e-13 Identities = 87/112 (78%), Gaps = 0/112 (0%) Strand=Plus/Minus Query 147503 TGTACTGCACGATTTCGGCGCACAGGTTGCTGCATTTTATGACTCCCAAATTTTGCTGAT 147562 |||||| ||| || || | ||||||||| |||||||| ||| |||| || ||||||| Sbjct 172430370 TGTACTCCACAATCTCTGTGCACAGGTTACTGCATTTAATGGTGCCCAGGTTCTGCTGAT 172430311 Query 147563 TGCTTTTCCGATTGCACGCGTCTTTGAAGAGCATGTACGGTCCGCCGGTCTC 147614 |||| || || ||||| || || ||| | ||||||||||| ||| ||||| Sbjct 172430310 TGCTCTTGCGGTTGCAGGCATCCTTGTACAGCATGTACGGAGTGCCAGTCTC 172430259 Score = 87.8 bits (96), Expect = 2e-12 Identities = 137/196 (70%), Gaps = 0/196 (0%) Strand=Plus/Plus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 || || || || || ||||| || | | ||| ||| |||||| ||||| || |||| | Sbjct 29378942 GATTCCTTCTGGATATTGTAATCACAGAGGGTGCGCCCATCTTCCAGCTGCTTGCCGGCA 29379001 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 |||| | | ||| || |||||||| ||||||||||| || || ||| ||| | Sbjct 29379002 AAGATCAACCTCTGCTGGTCTGGAGGAATGCCTTCTTTGTCTTGGATCTTTGCTTTGACA 29379061 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | || | ||| || | ||||| || || | || | || || |||||||| ||||| Sbjct 29379062 TTCTCAATAGTGTCACTTGGCTCTACCTCCAGGGTAATGGTCTTGCCAGTCAGGGTTTTC 29379121 Query 132110 ATGAAAATCTGCATGA 132125 | || |||||||||| Sbjct 29379122 ACAAAGATCTGCATGA 29379137 >seq2 Length=179946965 Score = 113 bits (124), Expect = 4e-20 Identities = 157/220 (71%), Gaps = 0/220 (0%) Strand=Plus/Minus Query 131905 CAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACG 131964 ||| || | |||||| || | | || || ||||||||||| ||||| || ||| || Sbjct 133019213 CAAACGGAGAACCAAGTGCAGAGTGGATTCCTTTTGAATGTTATAGTCTGACAGGGTTCG 133019154 Query 131965 CGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTC 132024 |||||| |||||||| || | | | || | | ||||| |||||||| |||||||| Sbjct 133019153 ACCATCTTCCAGCTGTTTGCCAGCAAAAATCAACCTTTGTTGGTCTGGAGGAATGCCTTC 133019094 Query 132025 TTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGT 132084 |||||| |||||| |||| | || | |||||| | ||||| ||||| | || Sbjct 133019093 TTTATCCTGAATTTTAGCCTTCACATTCTCAATAGTATCACTTGGCTCAACTTCTAGTGT 133019034 Query 132085 CAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCATG 132124 | || || ||||| |||||||| | || ||||||||| Sbjct 133019033 GATGGTCTTCCCAGTGAGAGTTTTCACAAATATCTGCATG 133018994 >seq1 Length=219802468 Score = 91.5 bits (100), Expect = 1e-13 Identities = 152/220 (69%), Gaps = 0/220 (0%) Strand=Plus/Minus Query 131905 CAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACG 131964 ||| || | |||||| || | | || || |||||||||||||| || || ||| || Sbjct 160683839 CAAACGGAGAACCAAGTGCAGAGTGGATTCCTTTTGAATGTTGTAATCTGACAGGGTTCG 160683780 Query 131965 CGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTC 132024 ||| || |||||||| || | |||| | | ||||| || || || |||||||| Sbjct 160683779 TCCATCCTCCAGCTGTTTGCCAGCGAAGATCAACCTTTGTTGGTCAGGGGGAATGCCTTC 160683720 Query 132025 TTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGT 132084 |||||| ||||| ||||| | || | || || | ||||| ||||| | || Sbjct 160683719 TTTATCTTGGATTTTAGCTTTCACATTCTCAATTGTGTCACTTGGCTCAACTTCAAGTGT 160683660 Query 132085 CAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCATG 132124 | || || ||||| |||||||| | || ||||||||| Sbjct 160683659 GATGGTCTTCCCAGTGAGAGTTTTCACAAATATCTGCATG 160683620 Score = 84.2 bits (92), Expect = 2e-11 Identities = 145/211 (69%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 131914 AACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTC 131973 ||| || || | | | || |||||||||||||||||||| | || || |||||| Sbjct 160684514 AACTAAGTGCAAGGTGGATTCTTTTTGAATGTTGTAGTCAGAAAGAGTGCGGCCATCTTC 160684455 Query 131974 GAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGT 132033 ||||| ||||| | | | || | | ||| ||||| ||||| ||||||||||| || Sbjct 160684454 CAGCTGCTTACCAGCAAAAATCAATCTCTGCTGATCAGGAGGAATGCCTTCTTTGTCTTG 160684395 Query 132034 AATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTT 132093 |||||| ||| | | ||| | || || | || || ||||| | || | || || Sbjct 160684394 GATTTTTGCTTTTACATTTTCAATTGTGTCACTTGGTTCAACTTCAAGGGTAATGGTCTT 160684335 Query 132094 ACCAGTCAGAGTTTTTATGAAAATCTGCATG 132124 ||||| | || || | || ||||||||| Sbjct 160684334 CCCAGTTAAGGTCTTGACAAATATCTGCATG 160684304 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475967578277880