Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xenopus_20laevis_20[refseq_20GCF_5F001663975.1_202016-08-09] 108,033 sequences; 2,718,433,805 total letters Query= NC_026511.1 Length=140913 Score E Sequences producing significant alignments: (Bits) Value seq3 114 1e-20 seq1 113 4e-20 seq2 111 1e-19 seq4 95.1 1e-14 >seq3 Length=181146889 Score = 114 bits (126), Expect = 1e-20 Identities = 140/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 35546 TCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAAT 35605 ||||| || || |||||||| | ||| ||| | || ||||||||||| || ||||| Sbjct 29378945 TCCTTCTGGATATTGTAATCACAGAGGGTGCGCCCATCTTCCAGCTGCTTGCCGGCAAAG 29379004 Query 35606 ATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTT 35665 ||||||| ||||||||| | ||||| || || ||||| ||||||| || | | | Sbjct 29379005 ATCAACCTCTGCTGGTCTGGAGGAATGCCTTCTTTGTCTTGGATCTTTGCTTTGACATTC 29379064 Query 35666 GCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACA 35725 | | ||||| || | || ||||||| || || || || || |||| ||||||||| Sbjct 29379065 TCAATAGTGTCACTTGGCTCTACCTCCAGGGTAATGGTCTTGCCAGTCAGGGTTTTCACA 29379124 Query 35726 AATATCTGCAT 35736 || |||||||| Sbjct 29379125 AAGATCTGCAT 29379135 Score = 107 bits (118), Expect = 2e-18 Identities = 139/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 ||| || || || ||||| || | ||| || | || ||||||||||| || ||||| Sbjct 29378488 CTCTTTCTGGATATTGTAGTCACAAAGGGTGCGACCATCTTCCAGCTGCTTGCCGGCAAA 29378547 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 ||||||| || ||||| | ||||| || || ||||| |||||| |||| | | Sbjct 29378548 GATCAACCTTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATCTTTGATTTCACATT 29378607 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | | ||||| || || || ||||||| || || || || || ||||||||||| || Sbjct 29378608 TTCTATGGTGTCACTTGACTCTACCTCCAGGGTAATGGTCTTGCCAGTCAAAGTTTTTAC 29378667 Query 35725 AAATATCTGCAT 35736 ||| |||||||| Sbjct 29378668 AAAGATCTGCAT 29378679 Score = 96.9 bits (106), Expect = 3e-15 Identities = 136/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 35546 TCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAAT 35605 ||||| || || ||||| || | ||| ||| | || ||||||||||| || ||||| Sbjct 29377066 TCCTTCTGGATATTGTAGTCACAAAGGGTGCGCCCATCTTCCAGCTGCTTGCCAGCAAAG 29377125 Query 35606 ATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTT 35665 ||||||| ||| ||||| | ||||| || || || || |||||| |||| || Sbjct 29377126 ATCAACCTCTGTTGGTCTGGAGGAATGCCTTCTTTATCTTGAATCTTTGATTTCACGTTT 29377185 Query 35666 GCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACA 35725 | | ||||| || | || ||||| | || || || || || ||||||||||| || Sbjct 29377186 TCTATGGTGTCACTTGGCTCTACCTCTAGGGTAATGGTCTTGCCAGTCAAAGTTTTTACG 29377245 Query 35726 AATATCTGCAT 35736 || |||||||| Sbjct 29377246 AAGATCTGCAT 29377256 Score = 96.9 bits (106), Expect = 3e-15 Identities = 138/192 (72%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 35546 TCCTTTTGAATGTTGTAATCGGCCAAG-GTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 ||||| || || ||||| || | ||| || || | || ||||||||||| || ||||| Sbjct 29378717 TCCTTCTGGATATTGTAGTCA-CAAAGCGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAA 29378775 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 ||||||| ||| ||||| | ||||| || || ||||| |||||| |||| | Sbjct 29378776 GATCAACCTCTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATCTTTGATTTCACGTT 29378835 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | | ||||| || | || ||||||| || || || || || |||| ||||| || Sbjct 29378836 TTCTATGGTGTCACTTGGCTCTACCTCCAGGGTAATGGTCTTGCCAGTCAGGGTTTTTAC 29378895 Query 35725 AAATATCTGCAT 35736 ||| |||||||| Sbjct 29378896 AAAGATCTGCAT 29378907 >seq1 Length=219802468 Score = 113 bits (124), Expect = 4e-20 Identities = 140/192 (73%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 ||| || ||||||||||| || | || ||||| | || |||||||||||||| ||||| Sbjct 160684040 CTCTTTCTGAATGTTGTAGTCTGACAGGGTTCTGCCATCTTCCAGCTGCTTACCAGCAAA 160683981 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 ||||| | ||||||||| | |||| | || ||||| ||| ||| ||| | | | Sbjct 160683980 AATCAATCTCTGCTGGTCAGGGGGAATACCTTCTTTGTCTTGGATTTTTGCCTTTACATT 160683921 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | ||||| || | |||||||| | || || || || || |||| || ||||| Sbjct 160683920 CTCAATAGTGTCACTTGGCTCCACCTCAAGAGTAATTGTCTTCCCTGTCAGGGTCTTCAC 160683861 Query 35725 AAATATCTGCAT 35736 |||||||||||| Sbjct 160683860 AAATATCTGCAT 160683849 Score = 109 bits (120), Expect = 5e-19 Identities = 141/192 (73%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 35546 TCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAAT 35605 |||||||||||||||||||| | || |||||| | || |||||||| || || || || Sbjct 160683811 TCCTTTTGAATGTTGTAATCTGACAGGGTTCGTCCATCCTCCAGCTGTTTGCCAGCGAAG 160683752 Query 35606 ATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTT-CAGAGT 35664 ||||||| || ||||| | |||| || || || || ||| ||| |||| || | | Sbjct 160683751 ATCAACCTTTGTTGGTCAGGGGGAATGCCTTCTTTATCTTGGAT-TTTAGCTTTCACATT 160683693 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | ||||| || | || || || | ||||| || || || || | ||||||||| Sbjct 160683692 CTCAATTGTGTCACTTGGCTCAACTTCAAGTGTGATGGTCTTCCCAGTGAGAGTTTTCAC 160683633 Query 35725 AAATATCTGCAT 35736 |||||||||||| Sbjct 160683632 AAATATCTGCAT 160683621 Score = 105 bits (116), Expect = 6e-18 Identities = 140/192 (73%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 35546 TCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAAT 35605 || |||||||||||||| || | | || || | || |||||||||||||| ||||| Sbjct 160684495 TCTTTTTGAATGTTGTAGTCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTACCAGCAAAA 160684436 Query 35606 ATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTC-AGAGT 35664 ||||| | |||||| || | ||||| || || ||||| ||| |||||||| | | | Sbjct 160684435 ATCAATCTCTGCTGATCAGGAGGAATGCCTTCTTTGTCTTGGAT-TTTTGCTTTTACATT 160684377 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | | ||||| || | ||| || || | || || || || || || || || || || Sbjct 160684376 TTCAATTGTGTCACTTGGTTCAACTTCAAGGGTAATGGTCTTCCCAGTTAAGGTCTTGAC 160684317 Query 35725 AAATATCTGCAT 35736 |||||||||||| Sbjct 160684316 AAATATCTGCAT 160684305 Score = 104 bits (114), Expect = 2e-17 Identities = 138/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 ||| ||||||||||||||||| | | || || | || ||||||||||| || ||||| Sbjct 160685180 CTCTTTTTGAATGTTGTAATCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTCCCAGCAAA 160685121 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 ||||| | ||| || || | |||| || || ||||| ||| ||| ||| | | | Sbjct 160685120 AATCAATCTCTGTTGATCAGGGGGAATGCCTTCTTTGTCTTGGATTTTTGCCTTAACATT 160685061 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | ||||| || | ||| || || | || || || || || |||| |||||||| Sbjct 160685060 CTCAATGGTGTCACTTGGTTCAACTTCTAGAGTAATTGTCTTCCCGGTCAGTGTTTTCAC 160685001 Query 35725 AAATATCTGCAT 35736 |||||||||||| Sbjct 160685000 AAATATCTGCAT 160684989 Score = 102 bits (112), Expect = 7e-17 Identities = 137/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 35546 TCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAAT 35605 || || ||||||||||| || | | || || | || ||||||||||| || |||||| Sbjct 160685407 TCTTTCTGAATGTTGTAGTCAGAGAGAGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAT 160685348 Query 35606 ATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTT 35665 ||||| | ||||||||| | |||| || ||||| ||| ||| ||| ||| | | | Sbjct 160685347 ATCAATCTCTGCTGGTCAGGGGGAATGCCTTCCTTATCCTGGATTTTTGCCTTTACATTC 160685288 Query 35666 GCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACA 35725 | | ||||| || | ||| || || | || || || || || || || || || ||| Sbjct 160685287 TCAATGGTGTCACTTGGTTCAACTTCAAGAGTAATGGTCTTCCCAGTTAAGGTCTTGACA 160685228 Query 35726 AATATCTGCAT 35736 ||||||||||| Sbjct 160685227 AATATCTGCAT 160685217 >seq2 Length=179946965 Score = 111 bits (122), Expect = 1e-19 Identities = 146/199 (73%), Gaps = 4/199 (2%) Strand=Plus/Minus Query 35546 TCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAAT 35605 |||||||||||||| || || | || |||||| | || |||||||| || || ||||| Sbjct 133019185 TCCTTTTGAATGTTATAGTCTGACAGGGTTCGACCATCTTCCAGCTGTTTGCCAGCAAAA 133019126 Query 35606 ATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGC-TTCAGAGT 35664 ||||||| || ||||| | ||||| || || || ||| ||| ||| || |||| | | Sbjct 133019125 ATCAACCTTTGTTGGTCTGGAGGAATGCCTTCTTTATCC-TGAATTTTAGCCTTCACATT 133019067 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | || || || | || || || | ||||| || || || || | ||||||||| Sbjct 133019066 CTCAATAGTATCACTTGGCTCAACTTCTAGTGTGATGGTCTTCCCAGTGAGAGTTTTCAC 133019007 Query 35725 AAATATCTGCA--TTCTGT 35741 ||||||||||| |||||| Sbjct 133019006 AAATATCTGCATGTTCTGT 133018988 Score = 93.3 bits (102), Expect = 4e-14 Identities = 148/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 35528 ACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCC 35587 ||||| || | ||| ||||| || || ||||| || | | |||| | | || ||| Sbjct 133019659 ACCAAGTGCAGAGTAGATTCCTTCTGTATATTGTAGTCAGATAGTGTTCTCCCATCTTCC 133019600 Query 35588 AGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATG 35647 ||||||||||| ||||| ||||| | || ||||| | |||| || |||||||| | Sbjct 133019599 AGCTGCTTACCAGCAAAGATCAATCTTTGTTGGTCAGGGGGAATGCCTTCCTTGTCTTGG 133019540 Query 35648 ATCTTTTGC-TTCAGAGTTGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTT 35706 || ||| || || | | | | | || || || | || ||||| | || || || || Sbjct 133019539 AT-TTTGGCTTTGACATTCTCAATAGTATCACTTGGCTCTACCTCAAGAGTAATTGTCTT 133019481 Query 35707 ACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 || |||| |||||||||||||||||||| Sbjct 133019480 CCCTGTCAGTGTTTTCACAAATATCTGCAT 133019451 Score = 89.7 bits (98), Expect = 5e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 35528 ACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCC 35587 |||||||| | || || || || || ||||| || | | |||| | | || ||| Sbjct 133019887 ACCAAATGCAGGGTTGATTCTTTCTGTATATTGTAGTCAGATAGTGTTCTCCCATCTTCC 133019828 Query 35588 AGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATG 35647 ||||||||||| ||||| ||||| | || ||||| | |||| || |||||||| | Sbjct 133019827 AGCTGCTTACCAGCAAAGATCAATCTTTGTTGGTCAGGGGGAATGCCTTCCTTGTCTTGG 133019768 Query 35648 ATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTA 35707 || || ||| | | | | | || || || | || ||||| | || || || || Sbjct 133019767 ATTTTGGCCTTGACATTCTCAATAGTATCACTTGGCTCTACCTCAAGAGTAATTGTCTTC 133019708 Query 35708 CCCGTCAAAGTTTTCACAAATATCTGCAT 35736 || |||| |||||||||||||||||||| Sbjct 133019707 CCTGTCAGTGTTTTCACAAATATCTGCAT 133019679 Score = 87.8 bits (96), Expect = 2e-12 Identities = 134/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 35546 TCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAAT 35605 ||||| ||||| |||||||| | || ||||| | || |||| || || || ||||| Sbjct 133019413 TCCTTCTGAATATTGTAATCAGACAGGGTTCTGCCATCTTCCAATTGTTTGCCAGCAAAG 133019354 Query 35606 ATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTT 35665 ||||| | || || || | |||| || |||||||| ||| || ||| | | | Sbjct 133019353 ATCAATCTTTGTTGATCAGGGGGAATGCCTTCCTTGTCTTGGATTTTGGCCTTGACATTC 133019294 Query 35666 GCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACA 35725 | | || ||||| | || ||||| | || || || || || ||||| || |||||| Sbjct 133019293 TCAATAGTATCGCTAGGCTCAACCTCAAGAGTAATTGTCTTCCCTGTCAAGGTCTTCACA 133019234 Query 35726 AATATCTGCAT 35736 ||||||||||| Sbjct 133019233 AATATCTGCAT 133019223 Score = 84.2 bits (92), Expect = 2e-11 Identities = 133/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 35546 TCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAAT 35605 || || || |||||||| || | | || || | || ||||||||||| || ||||| Sbjct 133020553 TCTTTCTGTATGTTGTAGTCAGAGAGAGTGCGACCATCTTCCAGCTGCTTGCCAGCAAAG 133020494 Query 35606 ATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTT 35665 ||||| | ||| ||||| | ||| | | ||||| ||| ||| ||| ||| | | | Sbjct 133020493 ATCAATCTCTGTTGGTCAGGAGGGATTCCTTCCTTATCCTGGATTTTTGCCTTTACATTC 133020434 Query 35666 GCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACA 35725 | | ||||| || | || || || | || || || || || || || || |||||| Sbjct 133020433 TCAATTGTGTCACTGGGCTCAACTTCAAGGGTAATGGTCTTCCCAGTTAAGGTCTTCACA 133020374 Query 35726 AATATCTGCAT 35736 ||||||||||| Sbjct 133020373 AATATCTGCAT 133020363 >seq4 Length=159726490 Score = 95.1 bits (104), Expect = 1e-14 Identities = 138/195 (71%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 35546 TCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAAT 35605 || || || || ||||| || | | ||| ||| | || ||||||||||| || ||||| Sbjct 6847658 TCTTTCTGGATATTGTAGTCTGAAAGGGTGCGCCCATCTTCCAGCTGCTTGCCGGCAAAG 6847599 Query 35606 ATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTT 35665 ||||||| ||||||||| | ||| | | || ||||| ||||||| || | | | Sbjct 6847598 ATCAACCTCTGCTGGTCTGGAGGGATACCTTCTTTGTCTTGGATCTTTGCTTTGACATTC 6847539 Query 35666 GCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACA 35725 | | ||||| || | || ||||| | || || || || || |||| ||||| ||| Sbjct 6847538 TCAATAGTGTCACTTGGCTCTACCTCTAGGGTAATGGTCTTGCCAGTCAGGGTTTTGACA 6847479 Query 35726 AATATCTGCATTCTG 35740 || ||||||||| || Sbjct 6847478 AAGATCTGCATTGTG 6847464 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450184842687640