Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xenopus_20laevis_20[refseq_20GCF_5F001663975.1_202016-08-09] 108,033 sequences; 2,718,433,805 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq12 132 7e-26 seq9 125 1e-23 seq10 122 1e-22 seq4 120 4e-22 seq11 118 1e-21 seq3 96.9 5e-15 >seq12 Length=128359586 Score = 132 bits (146), Expect = 7e-26 Identities = 111/136 (82%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 39639 CCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTT 39698 ||||||||||||| || | ||||| ||||| |||||||||||||| ||||| | || | Sbjct 109014789 CCTCATCTCTACTGATCAGCTCGTTGGAAAAGGTGAGTCCAGGCATGAGACCCCTTTTCT 109014848 Query 39699 TGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATG 39758 | ||||| || || |||||||| || ||||| ||||| || ||||||||||| ||||||| Sbjct 109014849 TTAGCCAGAAAATTGCAGCAAAGGACCCAGAGAAGAATATTCCTTCTACTGCAGCAAATG 109014908 Query 39759 CAACAAGTCTCTCTCC 39774 | || | ||| ||||| Sbjct 109014909 CCACGACTCTTTCTCC 109014924 >seq9 Length=159361991 Score = 125 bits (138), Expect = 1e-23 Identities = 108/134 (81%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 39641 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTTTG 39700 |||||||| ||||| | ||||||||| || |||||||||||||| || || || || || Sbjct 138039858 TCATCTCTGCTAATAAGTTCGTTAGAGAAAGTGAGTCCAGGCATCAGCCCTCGTTTCTTC 138039799 Query 39701 AGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATGCA 39760 ||||| ||||||| |||||| || ||||| || ||||| ||||| || || ||||| || Sbjct 138039798 AGCCAGAATATGGAAGCAAATGAACCAGAGAAAAAGATCCCTTCAACAGCAGCAAAGGCC 138039739 Query 39761 ACAAGTCTCTCTCC 39774 ||||| | ||| || Sbjct 138039738 ACAAGGCGCTCGCC 138039725 Score = 116 bits (128), Expect = 5e-21 Identities = 99/122 (81%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 39641 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTTTG 39700 |||||||| ||||| | ||| ||||| || |||||||||||||| || ||||| || || Sbjct 138027422 TCATCTCTGCTAATAAGTTCATTAGAGAAAGTGAGTCCAGGCATCAGTCCACGTTTCTTC 138027363 Query 39701 AGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATGCA 39760 |||||||| |||| ||||| || || || |||||||| ||||| || || |||||||| Sbjct 138027362 AGCCAAAAAATGGATGCAAATGAACCGGAGAAGAAGATCCCTTCAACAGCAGCAAATGCC 138027303 Query 39761 AC 39762 || Sbjct 138027302 AC 138027301 Score = 109 bits (120), Expect = 8e-19 Identities = 109/141 (77%), Gaps = 3/141 (2%) Strand=Plus/Minus Query 39270 TTTAAAAGTCAACATCTAAAGAAAAATGATTATCTTCTTG---TGACATAACTCCCATTT 39326 ||||||||||| | || | | ||| ||||||| | | |||||| || ||||| | Sbjct 138029415 TTTAAAAGTCAGCGTCCAGTGTGAAAGTGTTATCTTTTGGCTTTGACATGACACCCATCT 138029356 Query 39327 TTTGGTATTCACCAACGCGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTTT 39386 | |||||||||||||| | ||||| || || ||||| || |||||||| || || |||| Sbjct 138029355 TCTGGTATTCACCAACTCTCTTCTCAAAGAAGTTAGTCTTTCCTTCCAAAGAGATGTTTT 138029296 Query 39387 CCATGAAATCAAACGGATTAG 39407 ||||||| ||||| ||||||| Sbjct 138029295 CCATGAAGTCAAATGGATTAG 138029275 Score = 95.1 bits (104), Expect = 2e-14 Identities = 106/140 (76%), Gaps = 5/140 (4%) Strand=Plus/Minus Query 39270 TTTAAAAGTCAACATCTAAAGAAAAATGATTATCTT----CTTGTGACATAACTCCCATT 39325 ||||||||||| ||| || || || ||||| || |||| | ||| || ||||| Sbjct 138044454 TTTAAAAGTCAGCATTTAGAGTGAATTGATTTTCCGTGGCCTTG-GCCATGACACCCATC 138044396 Query 39326 TTTTGGTATTCACCAACGCGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTT 39385 || |||||||||||||| ||||| || ||||| || || ||||| || || || ||| Sbjct 138044395 TTCTGGTATTCACCAACTTTCTTCTCAAAGAAATTGGTCTTTCCTTCTAAGGAGATGTTT 138044336 Query 39386 TCCATGAAATCAAACGGATT 39405 |||||||| ||||| ||||| Sbjct 138044335 TCCATGAAGTCAAATGGATT 138044316 >seq10 Length=136570856 Score = 122 bits (134), Expect = 1e-22 Identities = 103/127 (81%), Gaps = 0/127 (0%) Strand=Plus/Minus Query 39641 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTTTG 39700 |||||||| ||||| | ||| ||||| || |||||||||||||| || || || || || Sbjct 119052163 TCATCTCTGCTAATAAGTTCATTAGAGAAAGTGAGTCCAGGCATCAGCCCCCGTTTCTTC 119052104 Query 39701 AGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATGCA 39760 |||||||| |||| ||||| || ||||| ||||| || ||||| || || ||||||||| Sbjct 119052103 AGCCAAAAAATGGATGCAAATGAGCCAGAGAAGAAAATACCTTCAACAGCAGCAAATGCA 119052044 Query 39761 ACAAGTC 39767 |||| || Sbjct 119052043 ACAACTC 119052037 Score = 111 bits (122), Expect = 2e-19 Identities = 115/149 (77%), Gaps = 5/149 (3%) Strand=Plus/Minus Query 39271 TTAAAAGTCAACATCTAAAGAAAAATGATTATCTT----CTTGTGACATAACTCCCATTT 39326 ||| |||||| |||| | | |||| || |||| |||| |||||||| ||||| | Sbjct 119053703 TTAGAAGTCAGCATCCAGTGTAAAAGTGTTGTCTTTTGCCTTG-GACATAACACCCATCT 119053645 Query 39327 TTTGGTATTCACCAACGCGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTTT 39386 | |||||||| ||||| ||||| ||||| ||||| || ||||||||||| || |||| Sbjct 119053644 TCTGGTATTCTCCAACTTTCTTCTCAAAAAAGTTAGTCTTTCCTTCCAATGAGATGTTTT 119053585 Query 39387 CCATGAAATCAAACGGATTAGTTGCATTA 39415 ||||||| ||||| ||||| || || ||| Sbjct 119053584 CCATGAAGTCAAATGGATTTGTGGCCTTA 119053556 >seq4 Length=159726490 Score = 120 bits (132), Expect = 4e-22 Identities = 131/174 (75%), Gaps = 0/174 (0%) Strand=Plus/Plus Query 70334 CACTAAATAGtttttttGTTTCCTTGTGTAAATTTGATATGGCTATTCTGGCTGCTAGAA 70393 ||||||||| ||| ||||| |||||||| || || || | ||||| | || || |||| Sbjct 158384213 CACTAAATATTTTCTTTGTCTCCTTGTGCAAGTTAGAAACAGCTATGCGAGCAGCCAGAA 158384272 Query 70394 TAGCATAGTCAGGATGTTGTGTAGTACAAGTAGCTGCTATTTCCGCAGCTAACGTATCTA 70453 | |||||||| ||||||| ||| || || |||||| | ||||| || | ||||| | Sbjct 158384273 TGGCATAGTCTGGATGTTTTGTTGTCAGGGTGGCTGCTGTCTCCGCTGCCAGGGTATCCA 158384332 Query 70454 ATTCTATAGTTGTAACTCCGTTATATAGCCCTTGAATAACTTTCATGGCTATTT 70507 ||||||||||| ||||| | || || || ||||| |||||||| | |||| Sbjct 158384333 GCTCTATAGTTGTGACTCCACTGTAAAGACCCTGAATTACTTTCATAGTAATTT 158384386 Score = 118 bits (130), Expect = 1e-21 Identities = 107/135 (79%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 68719 TGAAATTCCCCAGATAACACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 68778 || || || ||||| | ||||| || ||||| ||||| ||||||||||| || | |||| Sbjct 158378026 TGGAACTCGCCAGAAAGGACTCTGCGTGTGTATATATTGCTGGTATATGGCTCAATAGAT 158378085 Query 68779 TCATTATTTCCCAGAATTTGAGCAGTTGATGCAGTTGGCATAGGTGCCACCAATAAACTA 68838 |||||||| ||||| ||||||||||| || ||||| |||||||| |||| | ||||| Sbjct 158378086 TCATTATTGCCCAGGATTTGAGCAGTGGAAGCAGTGGGCATAGGAGCCAGAAGCAAACTG 158378145 Query 68839 TTTCTAAGACCATGT 68853 || || | |||||| Sbjct 158378146 TTCCTGATGCCATGT 158378160 Score = 105 bits (116), Expect = 9e-18 Identities = 126/171 (74%), Gaps = 0/171 (0%) Strand=Plus/Plus Query 68441 TCCATCCGTAGAAATGCATACTTGTTAGTTTGGAATAACTTGGATCGGCTATATGAATAT 68500 |||| || ||||| |||||||| || || ||| ||| | || || |||| |||||| | Sbjct 158376344 TCCAGCCATAGAAGTGCATACTGGTCAGCTTGCCATAGTTGGGTTCTGCTACATGAATGT 158376403 Query 68501 TCATCGATTGACTTTGATCGATGAAAGCTCCTCTATCTGCCGCCATTTTTATAATACTCT 68560 ||| || || || ||||| |||||||||||||| ||||| ||||| | || | ||| Sbjct 158376404 TCAATGACTGGCTCTGATCAATGAAAGCTCCTCTGTCTGCTGCCATAGTAATGACCGTCT 158376463 Query 68561 TTTGAGGAATTTCCCAAATAGTCTTAAAAATCTGTTTGATATCATCTGGAA 68611 | |||| |||||||| | ||||| | | || ||| | |||| | |||| Sbjct 158376464 TCTGAGATATTTCCCACACGGTCTTGTACAGCTCTTTCAGATCAGCAGGAA 158376514 Score = 87.8 bits (96), Expect = 2e-12 Identities = 102/135 (76%), Gaps = 2/135 (1%) Strand=Plus/Plus Query 69595 ACTCGTTTCATAAATAGATCGGGAATCCAAAGAGCTATA-AAGAGATCTCTGGTTCTATT 69653 || ||||||||||| ||||| || ||||| | || ||| || ||||| |||| ||| | Sbjct 158380757 ACACGTTTCATAAAGAGATCCGGTATCCACATGGC-ATAGAATAGATCCCTGGCTCTCTG 158380815 Query 69654 TTCTTCATTTCCTGTAttttttttAAGATCGAGAAACTCCATAATATCAGAATGCCATGG 69713 || || ||||| ||||| ||||| || || || || || | | |||| ||||||| || Sbjct 158380816 CTCCTCCTTTCCAGTATTCTTTTTTAGGTCCAGGAATTCAAACACATCATAATGCCAAGG 158380875 Query 69714 TTCTAGATATATCGC 69728 ||| || ||||| || Sbjct 158380876 TTCCAGGTATATGGC 158380890 Score = 86.0 bits (94), Expect = 9e-12 Identities = 101/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 69991 GTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGATTG 70050 || || ||||| || | ||||||||| || || |||||||||||||| || | ||||||| Sbjct 158382226 GTACCAGCATTGAACAGTGTAGGAGAAGCATGCGTGAACCATTTTTCTGACAACAGATTG 158382285 Query 70051 TATGTTTCAATAGCTGATTCTATATCCCACTGATGAATTCCTATCGCGACACGCATCAAC 70110 || ||||| ||||| | || ||||| | ||| || || | | || | ||||| | Sbjct 158382286 TAGGTTTCGATAGCAGCATCAATATCAGTTTTATGTATACCAACAGATACCCTCATCAGC 158382345 Query 70111 ATATGCTGAGGTCGTTC 70127 || || || || ||||| Sbjct 158382346 ATGTGTTGTGGCCGTTC 158382362 >seq11 Length=155008753 Score = 118 bits (130), Expect = 1e-21 Identities = 106/133 (80%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 39639 CCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTT 39698 |||| |||||||| || | ||||| ||||| |||||||||||||| ||||| | || | Sbjct 132627298 CCTCGTCTCTACTGATCAGCTCGTTGGAAAAGGTGAGTCCAGGCATGAGACCCCTTTTCT 132627357 Query 39699 TGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATG 39758 | ||||| || || |||||||| || ||||| || || || ||||||||||| | ||||| Sbjct 132627358 TCAGCCAGAAAATTGCAGCAAAGGAGCCAGAGAAAAATATTCCTTCTACTGCGGAAAATG 132627417 Query 39759 CAACAAGTCTCTC 39771 | || | |||||| Sbjct 132627418 CCACCACTCTCTC 132627430 >seq3 Length=181146889 Score = 96.9 bits (106), Expect = 5e-15 Identities = 101/133 (76%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 68719 TGAAATTCCCCAGATAACACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 68778 || || || ||||| | ||||| || ||||| ||||| ||||||||||| || | ||| Sbjct 172440455 TGGAACTCTCCAGAGAGGACTCTGCGTGTGTATATATTGCTGGTATATGGCTCAATGGAT 172440396 Query 68779 TCATTATTTCCCAGAATTTGAGCAGTTGATGCAGTTGGCATAGGTGCCACCAATAAACTA 68838 |||||||| ||||| ||||||||||| || || || ||||| || || | | ||||| Sbjct 172440395 TCATTATTGCCCAGGATTTGAGCAGTGGAAGCTGTGGGCATTGGAGCAAGAAGCAAACTG 172440336 Query 68839 TTTCTAAGACCAT 68851 || || | |||| Sbjct 172440335 TTCCTGATGCCAT 172440323 Score = 96.9 bits (106), Expect = 5e-15 Identities = 124/171 (73%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 68441 TCCATCCGTAGAAATGCATACTTGTTAGTTTGGAATAACTTGGATCGGCTATATGAATAT 68500 |||| || ||||| |||||||| || || ||| ||| | || || |||| ||| || | Sbjct 172441400 TCCAGCCATAGAAGTGCATACTGGTCAGCTTGCCATAGTTGGGTTCTGCTACATGGATGT 172441341 Query 68501 TCATCGATTGACTTTGATCGATGAAAGCTCCTCTATCTGCCGCCATTTTTATAATACTCT 68560 ||| || || || ||||| |||||||||||||| ||||| |||||| | || | ||| Sbjct 172441340 TCAATGACTGGCTCTGATCAATGAAAGCTCCTCTGTCTGCTGCCATTGTAATGACTGTCT 172441281 Query 68561 TTTGAGGAATTTCCCAAATAGTCTTAAAAATCTGTTTGATATCATCTGGAA 68611 | || | |||||||| | ||||| | | || ||| | ||| | |||| Sbjct 172441280 TCTGTGATATTTCCCACACGGTCTTGTACAGCTCTTTCAGTTCAGCAGGAA 172441230 Score = 93.3 bits (102), Expect = 6e-14 Identities = 105/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 69991 GTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGATTG 70050 || || ||||| || | ||| ||||| || || ||||||||||||||||| | ||||||| Sbjct 172427172 GTACCAGCATTGAACAGTGTGGGAGAAGCATGTGTGAACCATTTTTCAGACAACAGATTG 172427113 Query 70051 TATGTTTCAATAGCTGATTCTATATCCCACTGATGAATTCCTATCGCGACACGCATCAAC 70110 || ||||||||||||| || || || | ||| || || | | || | ||||| | Sbjct 172427112 TAGGTTTCAATAGCTGCATCAATGTCAGTTTTATGGATGCCAACGGATACCCTCATCAGC 172427053 Query 70111 ATATGCTGAGGTCGTTCTACC 70131 || || || ||||| ||| || Sbjct 172427052 ATGTGTTGTGGTCGCTCTGCC 172427032 Score = 87.8 bits (96), Expect = 2e-12 Identities = 102/135 (76%), Gaps = 2/135 (1%) Strand=Plus/Minus Query 69595 ACTCGTTTCATAAATAGATCGGGAATCCAAAGAGCTATA-AAGAGATCTCTGGTTCTATT 69653 || ||||||||||| ||||| || ||||| | || ||| || ||||| |||| ||| | Sbjct 172428926 ACACGTTTCATAAAGAGATCAGGTATCCACATGGC-ATAGAATAGATCCCTGGCTCTCTG 172428868 Query 69654 TTCTTCATTTCCTGTAttttttttAAGATCGAGAAACTCCATAATATCAGAATGCCATGG 69713 || || ||||| || || ||||| || || || || || | | |||| ||||||| || Sbjct 172428867 CTCCTCCTTTCCAGTGTTCTTTTTTAGGTCCAGGAAATCAAACACATCATAATGCCACGG 172428808 Query 69714 TTCTAGATATATCGC 69728 ||| |||||||| || Sbjct 172428807 TTCCAGATATATGGC 172428793 Score = 84.2 bits (92), Expect = 3e-11 Identities = 123/174 (71%), Gaps = 0/174 (0%) Strand=Plus/Minus Query 70334 CACTAAATAGtttttttGTTTCCTTGTGTAAATTTGATATGGCTATTCTGGCTGCTAGAA 70393 |||||||| ||| |||||||||||||| | || || | |||| | || || |||| Sbjct 172424806 CACTAAATGTTTTCTTTGTTTCCTTGTGCAGGTTGGAAACAGCTACGCGAGCAGCCAGAA 172424747 Query 70394 TAGCATAGTCAGGATGTTGTGTAGTACAAGTAGCTGCTATTTCCGCAGCTAACGTATCTA 70453 | ||||| || ||||||| || || || ||||| | ||||| || | || || | Sbjct 172424746 TGGCATAATCTGGATGTTTAGTTGTCAGGGTGGCTGCCGTCTCCGCTGCAAGTGTGTCCA 172424687 Query 70454 ATTCTATAGTTGTAACTCCGTTATATAGCCCTTGAATAACTTTCATGGCTATTT 70507 ||||||||||| || || | || || || || || |||||||| | |||| Sbjct 172424686 GCTCTATAGTTGTGACCCCACTGTAAAGACCCTGTATTACTTTCATAGTAATTT 172424633 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 685981189770120