Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xenopus_20laevis_20[refseq_20GCF_5F001663975.1_202016-08-09] 108,033 sequences; 2,718,433,805 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq9 96.9 3e-15 seq10 95.1 1e-14 >seq9 Length=159361991 Score = 96.9 bits (106), Expect = 3e-15 Identities = 86/108 (80%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 43913 CAAGAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAAT 43972 || ||||| ||| || | || | || || |||||||| ||||||||||| || || || Sbjct 138038872 CAGGAAGTGCAAGTAACCGAGGTTCGCTGCTTTTATGGTTTTCAAATTGCAATGGAGAAC 138038931 Query 43973 ATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGAT 44020 |||||||| |||||||||||||||||||| || || || || || ||| Sbjct 138038932 ATTCATTCTGAAATGTACAGTCTTCTGATTGACACATATATTAAGGAT 138038979 Score = 84.2 bits (92), Expect = 2e-11 Identities = 100/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 44123 GGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGATCGTTTGCG 44182 || || || ||||| || ||||| | ||| ||||| || || || || || || ||||| Sbjct 138039725 GGCGAGCGCCTTGTGGCCTTTGCTGCTGTTGAAGGGATCTTTTTCTCTGGTTCATTTGCT 138039784 Query 44183 GCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATGAGTTA 44242 ||||||| ||| | ||||||||||| |||||||||| | || || || || || | Sbjct 138039785 TCCATATTCTGGCTGAAGAAACGAGGGCTGATGCCTGGACTCACTTTCTCTAACGAACTT 138039844 Query 44243 ATAAGTCGTGATGAAG 44258 || || | ||||||| Sbjct 138039845 ATTAGCAGAGATGAAG 138039860 Score = 82.4 bits (90), Expect = 6e-11 Identities = 77/98 (79%), Gaps = 0/98 (0%) Strand=Plus/Plus Query 43685 GAAAATCCGTCTAGGTTTGTCGTGTTTCCAATTCAATATCATGACATATGGCAAATGTAC 43744 || ||||| ||| ||||| | || || || || ||||||||||| |||||||||||| Sbjct 138024947 GATAATCCACATAGATTTGTGATCTTCCCCATCCAGTATCATGACATCTGGCAAATGTAC 138025006 Query 43745 AAAAAAGCACAGGCGTCATTTTGGACAGCAGAAGAAGT 43782 || |||||| | || ||||| ||||| || ||||| || Sbjct 138025007 AAGAAAGCAGAAGCTTCATTCTGGACTGCTGAAGAGGT 138025044 Score = 82.4 bits (90), Expect = 6e-11 Identities = 85/110 (77%), Gaps = 1/110 (1%) Strand=Plus/Plus Query 43912 GCAAGAAGTT-CAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAA 43970 ||||| || | ||| | | || || || || |||||||| || ||||| || || || | Sbjct 138026709 GCAAGGAGGTGCAAGTTACTGAGGCTCGCTGCTTTTATGGCTTCCAAATCGCAATGGAGA 138026768 Query 43971 ATATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGAT 44020 | |||||||| ||||||||||| ||||| || || || ||||| |||||| Sbjct 138026769 ACATTCATTCTGAAATGTACAGCCTTCTTATTGACACCTACATTAAAGAT 138026818 >seq10 Length=136570856 Score = 95.1 bits (104), Expect = 1e-14 Identities = 85/107 (79%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 43914 AAGAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAATA 43973 ||||||| ||| | |||| || || || |||||||| || |||||||| || || |||| Sbjct 119051157 AAGAAGTGCAAGTTACAGAGGCTCGCTGCTTTTATGGCTTCCAAATTGCAATGGAGAATA 119051216 Query 43974 TTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGAT 44020 ||||||| ||||||||||| ||||| || || || || | |||||| Sbjct 119051217 TTCATTCAGAAATGTACAGCCTTCTTATTGACACCTATGTTAAAGAT 119051263 Score = 82.4 bits (90), Expect = 6e-11 Identities = 77/98 (79%), Gaps = 0/98 (0%) Strand=Plus/Plus Query 43685 GAAAATCCGTCTAGGTTTGTCGTGTTTCCAATTCAATATCATGACATATGGCAAATGTAC 43744 || ||||| ||| ||||| | || || || |||||||||||||| |||||||||||| Sbjct 119049999 GATAATCCACATAGATTTGTGATCTTCCCCATCCAATATCATGACATCTGGCAAATGTAC 119050058 Query 43745 AAAAAAGCACAGGCGTCATTTTGGACAGCAGAAGAAGT 43782 || |||||| | || ||||| ||||| || || || || Sbjct 119050059 AAGAAAGCAGAAGCTTCATTCTGGACTGCTGAGGAGGT 119050096 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396932688688165