Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xenopus_20laevis_20[refseq_20GCF_5F001663975.1_202016-08-09] 108,033 sequences; 2,718,433,805 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq3 100 2e-16 seq4 91.5 1e-13 seq1 89.7 4e-13 seq2 84.2 2e-11 >seq3 Length=181146889 Score = 100 bits (110), Expect = 2e-16 Identities = 148/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 27038 TACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTC 27097 ||| | ||| || || || || || || ||||||||||| | | | ||||| | ||||| Sbjct 29377047 TACAAGATGCAAGGTGGATTCCTTCTGGATATTGTAGTCACAAAGGGTGCGCCCATCTTC 29377106 Query 27098 GAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGC 27157 ||||| || || || | || | | |||||| || || || | || |||||||| Sbjct 29377107 CAGCTGCTTGCCAGCAAAGATCAACCTCTGTTGGTCTGGAGGAATGCCTTCTTTATCTTG 29377166 Query 27158 GATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTT 27217 ||||| ||||| | |||||| ||||| | | || || ||||| || || | || Sbjct 29377167 AATCTTTGATTTCACGTTTTCTATGGTGTCACTTGGCTCTACCTCTAGGGTAATGGTCTT 29377226 Query 27218 GCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 ||| |||| |||||| || ||||| ||||| Sbjct 29377227 GCCAGTCAAAGTTTTTACGAAGATCTGCAT 29377256 Score = 91.5 bits (100), Expect = 1e-13 Identities = 143/205 (70%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 27044 ATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTG 27103 ||| || || || || || || ||||||||||| | | |||| | ||||| ||||| Sbjct 29378704 ATGCAAGGTGGATTCCTTCTGGATATTGTAGTCACAAAGCGTGCGGCCATCTTCCAGCTG 29378763 Query 27104 TTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTT 27163 || ||||| | || | | |||||| || || || | || ||||| || ||||| Sbjct 29378764 CTTGCCGGCAAAGATCAACCTCTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATCTT 29378823 Query 27164 GTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGT 27223 ||||| | |||||| ||||| | | || || || || || || | ||||| || Sbjct 29378824 TGATTTCACGTTTTCTATGGTGTCACTTGGCTCTACCTCCAGGGTAATGGTCTTGCCAGT 29378883 Query 27224 CAGAGTTTTCACAAAGATTTGCATA 27248 ||| ||||| |||||||| |||||| Sbjct 29378884 CAGGGTTTTTACAAAGATCTGCATA 29378908 Score = 89.7 bits (98), Expect = 4e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 ||||| ||||| || ||||||||||| | | | |||| | ||||| ||||| || ||| Sbjct 29378483 GTAGACTCTTTCTGGATATTGTAGTCACAAAGGGTGCGACCATCTTCCAGCTGCTTGCCG 29378542 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 || | || | | ||||| || || || | || ||||| || ||||| |||| Sbjct 29378543 GCAAAGATCAACCTTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATCTTTGATTTC 29378602 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | |||||| ||||| | | || || || || || || | ||||| |||| |||| Sbjct 29378603 ACATTTTCTATGGTGTCACTTGACTCTACCTCCAGGGTAATGGTCTTGCCAGTCAAAGTT 29378662 Query 27231 TTCACAAAGATTTGCAT 27247 || |||||||| ||||| Sbjct 29378663 TTTACAAAGATCTGCAT 29378679 >seq4 Length=159726490 Score = 91.5 bits (100), Expect = 1e-13 Identities = 148/211 (70%), Gaps = 3/211 (1%) Strand=Plus/Minus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 || || ||||| || ||||||||||| | | ||||| | ||||| ||||| || ||| Sbjct 6847664 GTTGATTCTTTCTGGATATTGTAGTCTGAAAGGGTGCGCCCATCTTCCAGCTGCTTGCCG 6847605 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 || | || | | ||| || || || || | ||| ||||| || |||||| ||| Sbjct 6847604 GCAAAGATCAACCTCTGCTGGTCTGGAGGGATACCTTCTTTGTCTTGGATCTTTGCTTTG 6847545 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | | || | |||||| | | || || ||||| || || | ||||| ||||| ||| Sbjct 6847544 ACATTCTCAATAGTGTCACTTGGCTCTACCTCTAGGGTAATGGTCTTGCCAGTCAGGGTT 6847485 Query 27231 TTCACAAAGATTTGCATAGCTG--CTAAAAA 27259 || |||||||| ||||| | || ||||||| Sbjct 6847484 TTGACAAAGATCTGCATTG-TGACCTAAAAA 6847455 >seq1 Length=219802468 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 27039 ACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCG 27098 || || || || || || ||||||||||| ||||| || | |||| | ||||| Sbjct 160685197 ACTAAGTGCAAGGTGGACTCTTTTTGAATGTTGTAATCAGAAAGAGTGCGGCCATCTTCC 160685138 Query 27099 AGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCG 27158 ||||| || || || |||| | | ||||||||| || || | || ||||| || | Sbjct 160685137 AGCTGCTTCCCAGCAAAAATCAATCTCTGTTGATCAGGGGGAATGCCTTCTTTGTCTTGG 160685078 Query 27159 ATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTG 27218 || || || | | || | ||||| | | ||||||||||||||| || | || Sbjct 160685077 ATTTTTGCCTTAACATTCTCAATGGTGTCACTTGGTTCAACTTCTAGAGTAATTGTCTTC 160685018 Query 27219 CCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || ||||| ||||||||||| || ||||| Sbjct 160685017 CCGGTCAGTGTTTTCACAAATATCTGCAT 160684989 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 27039 ACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCG 27098 || || || || || || ||||| |||||||||||||| || | | | | ||||| Sbjct 160684969 ACTAAGTGCAAGGTTGACTCTTTCTGAATATTGTAGTCAGACAGGGTTCTGCCATCTTCT 160684910 Query 27099 AGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCG 27158 || || ||||| || |||| | | ||| || || || || | || ||||| || | Sbjct 160684909 AGTTGCTTACCAGCAAAAATCAATCTCTGCTGGTCAGGGGGAATGCCTTCTTTGTCTTGG 160684850 Query 27159 ATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTG 27218 || || ||| | | |||| | ||||| | | ||||||||| ||||| || | ||| Sbjct 160684849 ATTTTTGCTTTTACGTTTTCAATTGTGTCACTTGGTTCAACTTCAAGAGTAATTGTTTTA 160684790 Query 27219 CCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || || | || || ||||| |||||||| Sbjct 160684789 CCAGTTAAGGTCTTGACAAATATTTGCAT 160684761 >seq2 Length=179946965 Score = 84.2 bits (92), Expect = 2e-11 Identities = 156/229 (68%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 27019 TGCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGC 27078 |||| || | ||| || | ||||| || | || || || |||||||| || ||||| Sbjct 133019223 TGCCACCTCTCAAACGGAGAACCAAGTGCAGAGTGGATTCCTTTTGAATGTTATAGTCTG 133019164 Query 27079 TCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCG 27138 || | | || | ||||| |||||||| || || |||| | | ||||| || || | Sbjct 133019163 ACAGGGTTCGACCATCTTCCAGCTGTTTGCCAGCAAAAATCAACCTTTGTTGGTCTGGAG 133019104 Query 27139 GCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAA 27198 | | || |||||||| || || |||| | || | ||| || | | |||| Sbjct 133019103 GAATGCCTTCTTTATCCTGAATTTTAGCCTTCACATTCTCAATAGTATCACTTGGCTCAA 133019044 Query 27199 CTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 ||||||| || || | || || || |||||||||||||| || ||||| Sbjct 133019043 CTTCTAGTGTGATGGTCTTCCCAGTGAGAGTTTTCACAAATATCTGCAT 133018995 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424374909192696