Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xenopus_20laevis_20[refseq_20GCF_5F001663975.1_202016-08-09] 108,033 sequences; 2,718,433,805 total letters Query= NC_028238.1 Length=188534 Score E Sequences producing significant alignments: (Bits) Value seq10 100 3e-16 seq13 84.2 3e-11 >seq10 Length=136570856 Score = 100 bits (110), Expect = 3e-16 Identities = 106/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 32691 TCTAAAGGTATAGAATATCTAGATACTATTTTCTTCATAATGAGAAAGAAATTTAACCAA 32750 || ||||| | |||||| | || || | || |||||| | || || |||||||||||| Sbjct 71939142 TCAAAAGGAGTGGAATATTTTGACACAGTATTTTTCATACTAAGGAAAAAATTTAACCAA 71939201 Query 32751 GTTAGCTTTTTGCACGTATACCACCATTTTACCATGTTTACTTTAGGATGGATAGGGATT 32810 |||| |||||||||||||| ||||| | || ||||| || | | ||||| || || Sbjct 71939202 ATTAGTTTTTTGCACGTATATCACCACTGCACAATGTTCACACTTTGGTGGATCGGAATC 71939261 Query 32811 AAATGGTTTGCAGGAGGACA 32830 || ||| |||| |||||||| Sbjct 71939262 AAGTGGGTTGCCGGAGGACA 71939281 >seq13 Length=126821045 Score = 84.2 bits (92), Expect = 3e-11 Identities = 117/164 (71%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 50969 ACATTGGCTATAACTACCTGATGGTGATATTTACTTAACGCGTTCTTGGCTCTATCTATT 51028 |||||||| | ||||||||||||| ||| | || || ||| |||| |||||| Sbjct 88798549 ACATTGGCAACAACTACCTGATGGCTATAAGTTGCCAATGCCTTCCGTGCTCGCTCTATT 88798608 Query 51029 AGTATTTCTTCATTTGTTTCTAGTTTAAAGGAAACAACAAATGCTTTTGGGGCCCATTCG 51088 | || || ||| || ||||| || |||| |||||| || ||||||||||| || Sbjct 88798609 AAGATGGACGGATCTGTCTCCAGTTTGAATGAAATAACAAAGGCCTTTGGGGCCCACTCT 88798668 Query 51089 TTAACTAAATGGGCCATCATTTTAGGAACGGCCTTCATACTAAT 51132 ||||| ||| | | | |||||| ||||| |||||| |||| Sbjct 88798669 TTAACCAAAGGCGAAAGCATTTTCGGAACCATCTTCATTGTAAT 88798712 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 602366257107920