Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xenopus_20laevis_20[refseq_20GCF_5F001663975.1_202016-08-09] 108,033 sequences; 2,718,433,805 total letters Query= NC_028461.1 Length=127011 Score E Sequences producing significant alignments: (Bits) Value seq11 123 2e-23 >seq11 Length=155008753 Score = 123 bits (136), Expect = 2e-23 Identities = 124/161 (77%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 29945 CCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACC 30004 || ||||||||||| |||||||| ||||| | | ||| || |||||||||||||| || Sbjct 107958869 CCAGTGACGTGAGCAATCATGTAAGTGAGTAAGGCGTAACTAGCGATGTTAAAGGGCACT 107958928 Query 30005 CCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTCACG 30064 || || |||||||| || || |||||||| ||||| ||||| | |||| ||| ||| Sbjct 107958929 CCCAGGCCCATGTCTCCTGATCTCTGGTACAGCTGGCACGATAACTCTTTGTCAACTACG 107958988 Query 30065 TAAAACTGACACATGGCGTGGCACGGAGGAAGAGCCATGAG 30105 || ||||| || | | ||| || || || |||||||| || Sbjct 107958989 TAGAACTGGCAGAGAGTGTGACAAGGCGGCAGAGCCATAAG 107959029 Score = 107 bits (118), Expect = 2e-18 Identities = 116/154 (75%), Gaps = 0/154 (0%) Strand=Plus/Plus Query 30231 TGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTT 30290 |||| || || || || ||||||||||| || || ||||||||||| || ||||| || | Sbjct 107960644 TGTATTCAGCACCAAAGTGCCTCCACTGAAAACCATACACCGGTCCAAGATCTCCTTCCT 107960703 Query 30291 CCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCT 30350 | ||| ||| || |||||||||||| || | ||| || || || ||||| |||| Sbjct 107960704 CTCTGGTTGAGAATCCTTGCTTGTCCAAAAATTCCCGGGAGCCATTTGCATCCCAAATCT 107960763 Query 30351 TTACCCCCTTCTCAGAGAGCTCTTTGGAGTTTGT 30384 |||| || || |||| || ||||| ||||| || Sbjct 107960764 TTACGCCTTTTGCAGAAAGTTCTTTTGAGTTGGT 107960797 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 405775430523036