Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xenopus_20laevis_20[refseq_20GCF_5F001663975.1_202016-08-09] 108,033 sequences; 2,718,433,805 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq1 114 8e-21 seq3 111 1e-19 seq2 107 1e-18 seq63962 82.4 5e-11 >seq1 Length=219802468 Score = 114 bits (126), Expect = 8e-21 Identities = 168/233 (72%), Gaps = 6/233 (3%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || ||||| | ||| | ||||| || |||||| |||||||||||||| |||||||| Sbjct 160683847 CCCCCTCTCAAACGGAGAACCAAGTGCAGAGTGGATTCCTTTTGAATGTTGTAATCTGAC 160683788 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || ||||| | || || || ||||| || || || || || | |||||||| || || Sbjct 160683787 AGGGTTCGTCCATCCTCCAGCTGTTTGCCAGCGAAGATCAACCTTTGTTGGTCAGGGGGA 160683728 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGT--CTTCGCTCTCC 34656 | || || || ||| ||| ||| | ||| || | |||||||| ||| | ||| Sbjct 160683727 ATGCCTTCTTTATCTTGGAT-TTTAGCTTTCACATTCTCAATTGTGTCACTTGG--CTCA 160683671 Query 34657 ACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGTT 34709 ||||| | || || || || || || | ||||||||||| ||||||||||| Sbjct 160683670 ACTTCAAGTGTGATGGTCTTCCCAGTGAGAGTTTTCACAAATATCTGCATGTT 160683618 Score = 105 bits (116), Expect = 4e-18 Identities = 164/229 (72%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || ||||| ||||| | || || || | ||| ||| ||||||||||| ||||| ||| Sbjct 160685215 CCACCTCTGAGACGAAGAACTAAGTGCAAGGTGGACTCTTTTTGAATGTTGTAATCAGAA 160685156 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || || | ||||| || || || || ||||| || || | |||||| || || || Sbjct 160685155 AGAGTGCGGCCATCTTCCAGCTGCTTCCCAGCAAAAATCAATCTCTGTTGATCAGGGGGA 160685096 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTC-TTCGCTCTCCA 34657 | || || |||||| ||| ||||| ||||| | ||| ||||| | | | || | Sbjct 160685095 ATGCCTTCTTTGTCTTGGAT-TTTTGCCTTAACATTCTCAATGGTGTCACTTGGT-TCAA 160685038 Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 |||| | || || || || ||||| | ||||||||||| |||||||| Sbjct 160685037 CTTCTAGAGTAATTGTCTTCCCGGTCAGTGTTTTCACAAATATCTGCAT 160684989 Score = 104 bits (114), Expect = 1e-17 Identities = 162/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || ||||| ||||| | || || || | ||| || ||||||||||| || || ||| Sbjct 160684531 CCACCTCTGAGACGAAGAACTAAGTGCAAGGTGGATTCTTTTTGAATGTTGTAGTCAGAA 160684472 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || || | ||||| || || ||||| ||||| || || | ||| || || || || Sbjct 160684471 AGAGTGCGGCCATCTTCCAGCTGCTTACCAGCAAAAATCAATCTCTGCTGATCAGGAGGA 160684412 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAAAATTGTGTC-TTCGCTCTCCAC 34658 | || || |||||| ||| ||| ||||| | ||||||||| | | | || || Sbjct 160684411 ATGCCTTCTTTGTCTTGGATTTTTGCTTTTACATTTTCAATTGTGTCACTTGGT-TCAAC 160684353 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 ||| | ||| || || || || ||||| || || ||||| ||||||||| Sbjct 160684352 TTCAAGGGTAATGGTCTTCCCAGTTAAGGTCTTGACAAATATCTGCATG 160684304 >seq3 Length=181146889 Score = 111 bits (122), Expect = 1e-19 Identities = 172/240 (72%), Gaps = 7/240 (3%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || || ||||| | ||| | ||| || ||| ||||| || || || ||||| | Sbjct 29378909 CCACCCCTCAGACGAAGCACAAGATGAAGGGTGGATTCCTTCTGGATATTGTAATCACAG 29378968 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || ||| | ||||| || || || |||||||| || || | ||| ||||| || || Sbjct 29378969 AGGGTGCGCCCATCTTCCAGCTGCTTGCCGGCAAAGATCAACCTCTGCTGGTCTGGAGGA 29379028 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAA-AATTGTGTC--TTCGCTCTCC 34656 | || || |||||| ||||||| | ||| || | ||| ||||| || ||||| Sbjct 29379029 ATGCCTTCTTTGTCTTGGATCTTT-GCTTTGACATTCTCAATAGTGTCACTTGGCTCT-- 29379085 Query 34657 ACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG-TTGATTGT 34715 || |||| ||| || || || || || | ||||||||||| ||||||||| |||| ||| Sbjct 29379086 ACCTCCAGGGTAATGGTCTTGCCAGTCAGGGTTTTCACAAAGATCTGCATGATTGACTGT 29379145 >seq2 Length=179946965 Score = 107 bits (118), Expect = 1e-18 Identities = 166/234 (71%), Gaps = 6/234 (3%) Strand=Plus/Minus Query 34479 GCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGA 34538 ||| ||||| | ||| | ||||| || |||||| ||||||||||||||||| ||||| Sbjct 133019222 GCCACCTCTCAAACGGAGAACCAAGTGCAGAGTGGATTCCTTTTGAATGTTATAGTCTGA 133019163 Query 34539 AAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGG 34598 || ||||| | ||||| || ||||| || ||||| || || | |||||||| || || Sbjct 133019162 CAGGGTTCGACCATCTTCCAGCTGTTTGCCAGCAAAAATCAACCTTTGTTGGTCTGGAGG 133019103 Query 34599 CACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT---AAAATTGTGTCTTCGCTCTC 34655 | || || || || ||| ||| | || || | || | | | ||| | ||| Sbjct 133019102 AATGCCTTCTTTATC-CTGAATTTTAGCCTTCACATTCTCAATAGTATCACTTGG--CTC 133019046 Query 34656 CACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGTT 34709 ||||| | || || || || || || | ||||||||||| ||||||||||| Sbjct 133019045 AACTTCTAGTGTGATGGTCTTCCCAGTGAGAGTTTTCACAAATATCTGCATGTT 133018992 Score = 100 bits (110), Expect = 2e-16 Identities = 163/230 (71%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || ||||| ||||| | ||||| || ||||| ||||| || || || || || || Sbjct 133019677 CCACCTCTGAGACGAAGGACCAAGTGCAGAGTAGATTCCTTCTGTATATTGTAGTCAGAT 133019618 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 ||||||| | | ||||| || || ||||| ||||| || || | |||||||| || || Sbjct 133019617 AGTGTTCTCCCATCTTCCAGCTGCTTACCAGCAAAGATCAATCTTTGTTGGTCAGGGGGA 133019558 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAA-AATTGTGTC--TTCGCTCTCC 34656 | || ||||||||| ||| ||| | ||| || | ||| || || || ||||| Sbjct 133019557 ATGCCTTCCTTGTCTTGGAT-TTTGGCTTTGACATTCTCAATAGTATCACTTGGCTCT-- 133019501 Query 34657 ACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || || | || || || || || || | ||||||||||| |||||||| Sbjct 133019500 ACCTCAAGAGTAATTGTCTTCCCTGTCAGTGTTTTCACAAATATCTGCAT 133019451 Score = 91.5 bits (100), Expect = 9e-14 Identities = 161/230 (70%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || ||||| ||||| | |||||||| || || || || || || || || || || Sbjct 133019905 CCACCTCTCAGACGGAGAACCAAATGCAGGGTTGATTCTTTCTGTATATTGTAGTCAGAT 133019846 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 ||||||| | | ||||| || || ||||| ||||| || || | |||||||| || || Sbjct 133019845 AGTGTTCTCCCATCTTCCAGCTGCTTACCAGCAAAGATCAATCTTTGTTGGTCAGGGGGA 133019786 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAA-AATTGTGTC--TTCGCTCTCC 34656 | || ||||||||| ||| ||| | || || | ||| || || || ||||| Sbjct 133019785 ATGCCTTCCTTGTCTTGGAT-TTTGGCCTTGACATTCTCAATAGTATCACTTGGCTCT-- 133019729 Query 34657 ACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || || | || || || || || || | ||||||||||| |||||||| Sbjct 133019728 ACCTCAAGAGTAATTGTCTTCCCTGTCAGTGTTTTCACAAATATCTGCAT 133019679 >seq63962 Length=314 Score = 82.4 bits (90), Expect = 5e-11 Identities = 90/120 (75%), Gaps = 0/120 (0%) Strand=Plus/Plus Query 34479 GCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGA 34538 ||| |||| || |||||||||| || || ||| ||| || || ||||| || ||||| Sbjct 194 GCCACCTCGCAGGCGCAACACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCTGA 253 Query 34539 AAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGG 34598 || || || | || || || ||||| ||||||||||| | |||||| ||||| || || Sbjct 254 GAGAGTGCGGCCATCCTCCAGCTGTTTGCCGGCAAATATCAGACGCTGCTGGTCAGGTGG 313 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314315210583689