Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xenopus_20laevis_20[refseq_20GCF_5F001663975.1_202016-08-09] 108,033 sequences; 2,718,433,805 total letters Query= NC_029255.1 Length=129563 Score E Sequences producing significant alignments: (Bits) Value seq12 96.9 3e-15 seq11 95.1 1e-14 >seq12 Length=128359586 Score = 96.9 bits (106), Expect = 3e-15 Identities = 106/141 (75%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 3244 AGTTGTTGATGAGCTCTTCCGAGATGGGGTAAACTGGGGGCGCATTGTTGCTTTCTTTGA 3303 ||| || || |||||||| | ||||||||||||||||| | ||||||||||| || || Sbjct 66817266 AGTGGTGGAGGAGCTCTTTCATGATGGGGTAAACTGGGGAAGGATTGTTGCTTTTTTCGA 66817325 Query 3304 GTTTGGTGGTGTTATGTGTGTGGAAAGCGTCAATAGAGGCATACCCTCCCTCGTTGACAA 3363 ||||||||| || ||||| ||||| || || || | | || | | || || ||| Sbjct 66817326 GTTTGGTGGGGTCATGTGCGTGGAGAGTGTTAACCGCGAAATGTCTCCTCTGGTGGACTC 66817385 Query 3364 CATTGCCGCGTGGATGACAGA 3384 ||||| | ||||||||||| Sbjct 66817386 CATTGTGGGTTGGATGACAGA 66817406 >seq11 Length=155008753 Score = 95.1 bits (104), Expect = 1e-14 Identities = 105/140 (75%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 3245 GTTGTTGATGAGCTCTTCCGAGATGGGGTAAACTGGGGGCGCATTGTTGCTTTCTTTGAG 3304 || || || |||||||| | |||||||| |||||||| | ||||||||||| ||||| Sbjct 83700168 GTAGTGGAGGAGCTCTTTCATGATGGGGTGAACTGGGGAAGGATTGTTGCTTTTTTTGAA 83700109 Query 3305 TTTGGTGGTGTTATGTGTGTGGAAAGCGTCAATAGAGGCATACCCTCCCTCGTTGACAAC 3364 |||||||| || ||||| ||||| || | ||| ||| || | | || || ||| | Sbjct 83700108 TTTGGTGGGGTCATGTGCGTGGAGAGTATTAATCGAGAAATGTCTCCTCTGGTGGACTCC 83700049 Query 3365 ATTGCCGCGTGGATGACAGA 3384 |||| | ||||||||||| Sbjct 83700048 ATTGTGGGTTGGATGACAGA 83700029 Score = 91.5 bits (100), Expect = 1e-13 Identities = 115/158 (73%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 118537 CCTGTCAGGTGAGCAATCATGTATGTCAACAAACTGTAGCTGGCTACATTAAAAGGAACA 118596 || || | ||||||||||||||| || | || ||| || || | ||||| || || Sbjct 107958869 CCAGTGACGTGAGCAATCATGTAAGTGAGTAAGGCGTAACTAGCGATGTTAAAGGGCACT 107958928 Query 118597 CCCAGACCCATGTCTGCTGATCTCTGGTACAATTGGCAAGAGAGCTCCCCGTTTGCAACA 118656 ||||| ||||||||| ||||||||||||||| ||||| || | ||| || | || Sbjct 107958929 CCCAGGCCCATGTCTCCTGATCTCTGGTACAGCTGGCACGATAACTCTTTGTCAACTACG 107958988 Query 118657 TAAAACTGACTTATGATGTGACATGGAGGCAGAACCAT 118694 || ||||| | | ||||||| || |||||| |||| Sbjct 107958989 TAGAACTGGCAGAGAGTGTGACAAGGCGGCAGAGCCAT 107959026 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 413931078214612