Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xenopus_20laevis_20[refseq_20GCF_5F001663975.1_202016-08-09] 108,033 sequences; 2,718,433,805 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq63962 84.2 2e-11 seq2 82.4 7e-11 seq1 82.4 7e-11 >seq63962 Length=314 Score = 84.2 bits (92), Expect = 2e-11 Identities = 92/121 (76%), Gaps = 1/121 (1%) Strand=Plus/Plus Query 39057 GCCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGC 39116 ||| |||| | ||| ||||||| || || ||| |||||| || || || || || | Sbjct 194 GCCACCTCGCAGGCGCAACACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCTGA 253 Query 39117 AAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTC-GGTGG 39175 || || || | || || ||||||||||| |||||||| |||||||||||||| ||||| Sbjct 254 GAGAGTGCGGCCATCCTCCAGCTGTTTGCCGGCAAATATCAGACGCTGCTGGTCAGGTGG 313 Query 39176 G 39176 | Sbjct 314 G 314 >seq2 Length=179946965 Score = 82.4 bits (90), Expect = 7e-11 Identities = 164/243 (67%), Gaps = 0/243 (0%) Strand=Plus/Minus Query 39045 AAATTTATTCAAGCCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTAT 39104 |||| | | || ||| ||||| || || | ||||| || || ||| || ||||| || Sbjct 133019234 AAATATCTGCATGCCACCTCTCAAACGGAGAACCAAGTGCAGAGTGGATTCCTTTTGAAT 133019175 Query 39105 ATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTG 39164 ||||| || | || ||||| | || || ||||||||||| ||||| || | | || Sbjct 133019174 GTTATAGTCTGACAGGGTTCGACCATCTTCCAGCTGTTTGCCAGCAAAAATCAACCTTTG 133019115 Query 39165 CTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATC 39224 ||||| | || | || ||||| ||| ||||| || | || | | ||||| Sbjct 133019114 TTGGTCTGGAGGAATGCCTTCTTTATCCTGAATTTTAGCCTTCACATTCTCAATAGTATC 133019055 Query 39225 GCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 || | ||| || || | ||||| | || || || || ||||| ||||| || ||||| Sbjct 133019054 ACTTGGCTCAACTTCTAGTGTGATGGTCTTCCCAGTGAGAGTTTTCACAAATATCTGCAT 133018995 Query 39285 CTT 39287 || Sbjct 133018994 GTT 133018992 >seq1 Length=219802468 Score = 82.4 bits (90), Expect = 7e-11 Identities = 164/243 (67%), Gaps = 0/243 (0%) Strand=Plus/Minus Query 39045 AAATTTATTCAAGCCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTAT 39104 |||| | | || || ||||| || || | ||||| || || ||| || ||||| || Sbjct 160683860 AAATATCTGCATCCCCCCTCTCAAACGGAGAACCAAGTGCAGAGTGGATTCCTTTTGAAT 160683801 Query 39105 ATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTG 39164 || ||||| | || |||||| | || || ||||||||||| || || || | | || Sbjct 160683800 GTTGTAATCTGACAGGGTTCGTCCATCCTCCAGCTGTTTGCCAGCGAAGATCAACCTTTG 160683741 Query 39165 CTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATC 39224 ||||| | ||| | || ||||| || |||||| ||| | || | | || || Sbjct 160683740 TTGGTCAGGGGGAATGCCTTCTTTATCTTGGATTTTAGCTTTCACATTCTCAATTGTGTC 160683681 Query 39225 GCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 || | ||| || || | ||||| | || || || || ||||| ||||| || ||||| Sbjct 160683680 ACTTGGCTCAACTTCAAGTGTGATGGTCTTCCCAGTGAGAGTTTTCACAAATATCTGCAT 160683621 Query 39285 CTT 39287 || Sbjct 160683620 GTT 160683618 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 428980037846129