Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xenopus_20laevis_20[refseq_20GCF_5F001663975.1_202016-08-09] 108,033 sequences; 2,718,433,805 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq1 140 2e-28 seq2 109 4e-19 seq3 107 1e-18 seq4 104 2e-17 seq12 100 2e-16 >seq1 Length=219802468 Score = 140 bits (154), Expect = 2e-28 Identities = 159/211 (75%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || || ||||| || || || || || || ||||| |||||||| | | Sbjct 160684989 ATGCAGATATTTGTGAAAACACTGACCGGGAAGACAATTACTCTAGAAGTTGAACCAAGT 160685048 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| |||| ||| |||| |||||| | ||||||||||| | || || ||||| Sbjct 160685049 GACACCATTGAGAATGTTAAGGCAAAAA-TCCAAGACAAAGAAGGCATTCCCCCTGATCA 160685107 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 |||| | || || ||||| || || || |||||||| | |||||| | |||||||| Sbjct 160685108 ACAGAGATTGATTTTTGCTGGGAAGCAGCTGGAAGATGGCCGCACTCTTTCTGATTACAA 160685167 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTT 23820 ||| |||||||||||||| || || |||||| Sbjct 160685168 CATTCAAAAAGAGTCCACCTTGCACTTAGTT 160685198 Score = 122 bits (134), Expect = 6e-23 Identities = 153/210 (73%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || || || ||| | || || || || || || || |||||||| | | Sbjct 160684305 ATGCAGATATTTGTCAAGACCTTAACTGGGAAGACCATTACCCTTGAAGTTGAACCAAGT 160684364 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| |||||| ||||| |||||| ||||||||||| | || || ||||| Sbjct 160684365 GACACAATTGAAAATGTAAAAGCAAAAATCCAAGACAAAGAAGGCATTCCTCCTGATCAG 160684424 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||| | || || ||||| || || || |||||||| | |||||| | || |||||| Sbjct 160684425 CAGAGATTGATTTTTGCTGGTAAGCAGCTGGAAGATGGCCGCACTCTTTCTGACTACAAC 160684484 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTT 23820 || |||||||| ||||| || || |||||| Sbjct 160684485 ATTCAAAAAGAATCCACCTTGCACTTAGTT 160684514 Score = 107 bits (118), Expect = 1e-18 Identities = 164/231 (71%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 || |||||||| || || ||||| ||||| || || || ||||| || |||||||| | Sbjct 160683618 AACATGCAGATATTTGTGAAAACTCTCACTGGGAAGACCATCACACTTGAAGTTGAGCCA 160683677 Query 23668 ACGGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGA 23726 | ||||| |||| ||| | ||| | |||| | || |||||||| | || || || Sbjct 160683678 AGTGACACAATTGAGAATGTGAAAGCTAAAA-TCCAAGATAAAGAAGGCATTCCCCCTGA 160683736 Query 23727 TCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTA 23786 ||||| | || || || || |||||||| ||||| || | ||| || | ||||| Sbjct 160683737 CCAACAAAGGTTGATCTTCGCTGGCAAACAGCTGGAGGATGGACGAACCCTGTCAGATTA 160683796 Query 23787 CAACATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 |||||| ||||| || ||||| | || || ||| | | ||| |||| || Sbjct 160683797 CAACATTCAAAAGGAATCCACTCTGCACTTGGTTCTCCGTTTGAGAGGGGG 160683847 Score = 104 bits (114), Expect = 2e-17 Identities = 149/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || || || ||||| || || || || || ||||| || || || | | Sbjct 160683849 ATGCAGATATTTGTGAAGACCCTGACAGGGAAGACAATTACTCTTGAGGTGGAGCCAAGT 160683908 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 |||||| |||| | |||| |||||| |||||||||||| | || || || || Sbjct 160683909 GACACTATTGAGAATGTAAAGGCAAAAATCCAAGACAAAGAAGGTATTCCCCCTGACCAG 160683968 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||| | || || ||||| || || || |||||||| | | || | || |||||| Sbjct 160683969 CAGAGATTGATTTTTGCTGGTAAGCAGCTGGAAGATGGCAGAACCCTGTCAGACTACAAC 160684028 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTT 23820 || || ||||||||||| || || |||||| Sbjct 160684029 ATTCAGAAAGAGTCCACCTTGCACTTAGTT 160684058 Score = 100 bits (110), Expect = 2e-16 Identities = 148/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| || || || || ||| | || || ||||| || ||||| |||||||| | | Sbjct 160684761 ATGCAAATATTTGTCAAGACCTTAACTGGTAAAACAATTACTCTTGAAGTTGAACCAAGT 160684820 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| |||||| ||||| |||||| ||||||||||| | || || || || Sbjct 160684821 GACACAATTGAAAACGTAAAAGCAAAAATCCAAGACAAAGAAGGCATTCCCCCTGACCAG 160684880 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||| | || || ||||| || || ||||| ||||| | | || | || ||||| Sbjct 160684881 CAGAGATTGATTTTTGCTGGTAAGCAACTAGAAGATGGCAGAACCCTGTCTGACTACAAT 160684940 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTT 23820 || || |||||||| || || || |||||| Sbjct 160684941 ATTCAGAAAGAGTCAACCTTGCACTTAGTT 160684970 >seq2 Length=179946965 Score = 109 bits (120), Expect = 4e-19 Identities = 163/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| || || || || ||| | || || ||||| || || || |||||||| | | Sbjct 133019907 ATGCAAATATTTGTCAAGACCTTAACTGGTAAAACCATTACCCTTGAAGTTGAGCCAAGT 133019966 Query 23671 GACACTGTTGAAA-TATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| |||||| | |||| |||||| || || ||||||||| | || || || || Sbjct 133019967 GACACAATTGAAAATGTTAAGGCAAAAA-TTCAGGATAAAGAAGGTATTCCCCCTGACCA 133020025 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| | || || ||||| ||||| ||||||||||| | || || | || || || Sbjct 133020026 GCAGAGATTGATTTTTGCTGGCAAGCAACTGGAAGATGGCCGAACCCTGTCAGACTATAA 133020085 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGGA 23838 ||| || ||||| ||||| || || |||||| | | || |||| ||| Sbjct 133020086 CATCCAGAAAGAATCCACCTTGCACTTAGTTCTCCGTCTGAGAGGTGGA 133020134 Score = 104 bits (114), Expect = 2e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || || || ||| | || || || || || || || |||||||| ||| Sbjct 133020363 ATGCAGATATTTGTGAAGACCTTAACTGGGAAGACCATTACCCTTGAAGTTGAGCCCAGT 133020422 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| |||| | |||| |||||| || || ||||| | || || || ||| Sbjct 133020423 GACACAATTGAGAATGTAAAGGCAAAAATCCAGGATAAGGAAGGAATCCCTCCTGACCAA 133020482 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||| | || || ||||| ||||| || |||||||| | |||||| | || |||||| Sbjct 133020483 CAGAGATTGATCTTTGCTGGCAAGCAGCTGGAAGATGGTCGCACTCTCTCTGACTACAAC 133020542 Query 23791 ATACAAAAAGAGTCCAC 23807 ||||| ||||| ||||| Sbjct 133020543 ATACAGAAAGAATCCAC 133020559 >seq3 Length=181146889 Score = 107 bits (118), Expect = 1e-18 Identities = 146/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || || |||||||| || || || || || || || || || || | | Sbjct 29378907 ATGCAGATCTTTGTAAAAACCCTGACTGGCAAGACCATTACCCTGGAGGTAGAGCCAAGT 29378848 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| | |||| | ||| ||| ||| ||||||||||| | || ||||| ||| Sbjct 29378847 GACACCATAGAAAACGTGAAATCAAAGATTCAAGACAAAGAAGGCATTCCTCCAGACCAA 29378788 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||| | || || ||||||||||| || |||||||| | ||||| | | || ||||| Sbjct 29378787 CAGAGGTTGATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACGCTTTGTGACTACAAT 29378728 Query 23791 ATACAAAAAGAGTCCACATTACAT 23814 || || || || ||||| || ||| Sbjct 29378727 ATCCAGAAGGAATCCACCTTGCAT 29378704 Score = 107 bits (118), Expect = 1e-18 Identities = 144/198 (73%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || || |||||||| || || || || || || || || || || | | Sbjct 29379135 ATGCAGATCTTTGTGAAAACCCTGACTGGCAAGACCATTACCCTGGAGGTAGAGCCAAGT 29379076 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 |||||| |||| ||| | ||| |||| | | ||||||||||| | || ||||| || Sbjct 29379075 GACACTATTGAGAATGTCAAAGCAAAGA-TCCAAGACAAAGAAGGCATTCCTCCAGACCA 29379017 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| | || || ||||||||||| || |||||||| | ||||| | | |||||||| Sbjct 29379016 GCAGAGGTTGATCTTTGCCGGCAAGCAGCTGGAAGATGGGCGCACCCTCTGTGATTACAA 29378957 Query 23790 CATACAAAAAGAGTCCAC 23807 || || || || ||||| Sbjct 29378956 TATCCAGAAGGAATCCAC 29378939 Score = 98.7 bits (108), Expect = 7e-16 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || || ||||| | || || || || || || || || || || || | Sbjct 29378679 ATGCAGATCTTTGTAAAAACTTTGACTGGCAAGACCATTACCCTGGAGGTAGAGTCAAGT 29378620 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| | |||| | ||| ||| ||| ||||||||||| | || ||||| ||| Sbjct 29378619 GACACCATAGAAAATGTGAAATCAAAGATTCAAGACAAAGAAGGCATTCCTCCAGACCAA 29378560 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 || | || || ||||||||||| || |||||||| | ||||| | | || ||||| Sbjct 29378559 CAAAGGTTGATCTTTGCCGGCAAGCAGCTGGAAGATGGTCGCACCCTTTGTGACTACAAT 29378500 Query 23791 ATACAAAAAGAGTCCAC 23807 || || |||||||| || Sbjct 29378499 ATCCAGAAAGAGTCTAC 29378483 >seq4 Length=159726490 Score = 104 bits (114), Expect = 2e-17 Identities = 144/199 (72%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 ||||||||| || || |||||||| || || || || || || || || || || | | Sbjct 6847467 AATGCAGATCTTTGTCAAAACCCTGACTGGCAAGACCATTACCCTAGAGGTAGAGCCAAG 6847526 Query 23670 GGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATC 23728 |||||| |||| ||| | ||| |||| | | |||||||||||| | || ||||| | Sbjct 6847527 TGACACTATTGAGAATGTCAAAGCAAAGA-TCCAAGACAAAGAAGGTATCCCTCCAGACC 6847585 Query 23729 AACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACA 23788 | ||| | || || ||||||||||| || |||||||| | ||||| | || |||| Sbjct 6847586 AGCAGAGGTTGATCTTTGCCGGCAAGCAGCTGGAAGATGGGCGCACCCTTTCAGACTACA 6847645 Query 23789 ACATACAAAAAGAGTCCAC 23807 | || || ||||| || || Sbjct 6847646 ATATCCAGAAAGAATCAAC 6847664 >seq12 Length=128359586 Score = 100 bits (110), Expect = 2e-16 Identities = 151/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 || ||||| || || || |||||||| || | ||||| ||||| || || | | | ||| Sbjct 101402629 AAGATGCAAATCTTTGTAAAAACCCTTACTTGGAAAACAATCACCCTTGAGGGTAAATCC 101402688 Query 23668 ACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGAT 23727 | || || |||||| | || ||||| || || |||||| | || || || Sbjct 101402689 AGTGATACCATTGAAAATGTGAAGGCTAAAATCCAGGATAAGGAAGGTATTCCCCCTGAC 101402748 Query 23728 CAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTAC 23787 || ||| || | | ||||| || ||||| || ||||| |||| |||| || || || Sbjct 101402749 CAGCAGTGTCTGCTCTTTGCTGGTAAACAGCTTGAAGATGAACACACTCTATATGACTAT 101402808 Query 23788 AACATACAAAAAGAGTCCACATTACATTTAGTTTT 23822 ||||| || |||||||||||||| || |||| || Sbjct 101402809 AACATCCAGAAAGAGTCCACATTGCACCTAGTGTT 101402843 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 337564558920764