Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Xenopus_20laevis_20[refseq_20GCF_5F001663975.1_202016-08-09]
108,033 sequences; 2,718,433,805 total letters
Query= NC_029997.1
Length=105667
Score E
Sequences producing significant alignments: (Bits) Value
seq1 140 2e-28
seq2 109 4e-19
seq3 107 1e-18
seq4 104 2e-17
seq12 100 2e-16
>seq1
Length=219802468
Score = 140 bits (154), Expect = 2e-28
Identities = 159/211 (75%), Gaps = 2/211 (1%)
Strand=Plus/Plus
Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670
|||||||| || || ||||| || || || || || || ||||| |||||||| | |
Sbjct 160684989 ATGCAGATATTTGTGAAAACACTGACCGGGAAGACAATTACTCTAGAAGTTGAACCAAGT 160685048
Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729
||||| |||| ||| |||| |||||| | ||||||||||| | || || |||||
Sbjct 160685049 GACACCATTGAGAATGTTAAGGCAAAAA-TCCAAGACAAAGAAGGCATTCCCCCTGATCA 160685107
Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789
|||| | || || ||||| || || || |||||||| | |||||| | ||||||||
Sbjct 160685108 ACAGAGATTGATTTTTGCTGGGAAGCAGCTGGAAGATGGCCGCACTCTTTCTGATTACAA 160685167
Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTT 23820
||| |||||||||||||| || || ||||||
Sbjct 160685168 CATTCAAAAAGAGTCCACCTTGCACTTAGTT 160685198
Score = 122 bits (134), Expect = 6e-23
Identities = 153/210 (73%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670
|||||||| || || || ||| | || || || || || || || |||||||| | |
Sbjct 160684305 ATGCAGATATTTGTCAAGACCTTAACTGGGAAGACCATTACCCTTGAAGTTGAACCAAGT 160684364
Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730
||||| |||||| ||||| |||||| ||||||||||| | || || |||||
Sbjct 160684365 GACACAATTGAAAATGTAAAAGCAAAAATCCAAGACAAAGAAGGCATTCCTCCTGATCAG 160684424
Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790
||| | || || ||||| || || || |||||||| | |||||| | || ||||||
Sbjct 160684425 CAGAGATTGATTTTTGCTGGTAAGCAGCTGGAAGATGGCCGCACTCTTTCTGACTACAAC 160684484
Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTT 23820
|| |||||||| ||||| || || ||||||
Sbjct 160684485 ATTCAAAAAGAATCCACCTTGCACTTAGTT 160684514
Score = 107 bits (118), Expect = 1e-18
Identities = 164/231 (71%), Gaps = 2/231 (1%)
Strand=Plus/Plus
Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667
|| |||||||| || || ||||| ||||| || || || ||||| || |||||||| |
Sbjct 160683618 AACATGCAGATATTTGTGAAAACTCTCACTGGGAAGACCATCACACTTGAAGTTGAGCCA 160683677
Query 23668 ACGGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGA 23726
| ||||| |||| ||| | ||| | |||| | || |||||||| | || || ||
Sbjct 160683678 AGTGACACAATTGAGAATGTGAAAGCTAAAA-TCCAAGATAAAGAAGGCATTCCCCCTGA 160683736
Query 23727 TCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTA 23786
||||| | || || || || |||||||| ||||| || | ||| || | |||||
Sbjct 160683737 CCAACAAAGGTTGATCTTCGCTGGCAAACAGCTGGAGGATGGACGAACCCTGTCAGATTA 160683796
Query 23787 CAACATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837
|||||| ||||| || ||||| | || || ||| | | ||| |||| ||
Sbjct 160683797 CAACATTCAAAAGGAATCCACTCTGCACTTGGTTCTCCGTTTGAGAGGGGG 160683847
Score = 104 bits (114), Expect = 2e-17
Identities = 149/210 (71%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670
|||||||| || || || ||||| || || || || || ||||| || || || | |
Sbjct 160683849 ATGCAGATATTTGTGAAGACCCTGACAGGGAAGACAATTACTCTTGAGGTGGAGCCAAGT 160683908
Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730
|||||| |||| | |||| |||||| |||||||||||| | || || || ||
Sbjct 160683909 GACACTATTGAGAATGTAAAGGCAAAAATCCAAGACAAAGAAGGTATTCCCCCTGACCAG 160683968
Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790
||| | || || ||||| || || || |||||||| | | || | || ||||||
Sbjct 160683969 CAGAGATTGATTTTTGCTGGTAAGCAGCTGGAAGATGGCAGAACCCTGTCAGACTACAAC 160684028
Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTT 23820
|| || ||||||||||| || || ||||||
Sbjct 160684029 ATTCAGAAAGAGTCCACCTTGCACTTAGTT 160684058
Score = 100 bits (110), Expect = 2e-16
Identities = 148/210 (70%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670
||||| || || || || ||| | || || ||||| || ||||| |||||||| | |
Sbjct 160684761 ATGCAAATATTTGTCAAGACCTTAACTGGTAAAACAATTACTCTTGAAGTTGAACCAAGT 160684820
Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730
||||| |||||| ||||| |||||| ||||||||||| | || || || ||
Sbjct 160684821 GACACAATTGAAAACGTAAAAGCAAAAATCCAAGACAAAGAAGGCATTCCCCCTGACCAG 160684880
Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790
||| | || || ||||| || || ||||| ||||| | | || | || |||||
Sbjct 160684881 CAGAGATTGATTTTTGCTGGTAAGCAACTAGAAGATGGCAGAACCCTGTCTGACTACAAT 160684940
Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTT 23820
|| || |||||||| || || || ||||||
Sbjct 160684941 ATTCAGAAAGAGTCAACCTTGCACTTAGTT 160684970
>seq2
Length=179946965
Score = 109 bits (120), Expect = 4e-19
Identities = 163/229 (71%), Gaps = 2/229 (1%)
Strand=Plus/Plus
Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670
||||| || || || || ||| | || || ||||| || || || |||||||| | |
Sbjct 133019907 ATGCAAATATTTGTCAAGACCTTAACTGGTAAAACCATTACCCTTGAAGTTGAGCCAAGT 133019966
Query 23671 GACACTGTTGAAA-TATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729
||||| |||||| | |||| |||||| || || ||||||||| | || || || ||
Sbjct 133019967 GACACAATTGAAAATGTTAAGGCAAAAA-TTCAGGATAAAGAAGGTATTCCCCCTGACCA 133020025
Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789
||| | || || ||||| ||||| ||||||||||| | || || | || || ||
Sbjct 133020026 GCAGAGATTGATTTTTGCTGGCAAGCAACTGGAAGATGGCCGAACCCTGTCAGACTATAA 133020085
Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGGA 23838
||| || ||||| ||||| || || |||||| | | || |||| |||
Sbjct 133020086 CATCCAGAAAGAATCCACCTTGCACTTAGTTCTCCGTCTGAGAGGTGGA 133020134
Score = 104 bits (114), Expect = 2e-17
Identities = 141/197 (72%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670
|||||||| || || || ||| | || || || || || || || |||||||| |||
Sbjct 133020363 ATGCAGATATTTGTGAAGACCTTAACTGGGAAGACCATTACCCTTGAAGTTGAGCCCAGT 133020422
Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730
||||| |||| | |||| |||||| || || ||||| | || || || |||
Sbjct 133020423 GACACAATTGAGAATGTAAAGGCAAAAATCCAGGATAAGGAAGGAATCCCTCCTGACCAA 133020482
Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790
||| | || || ||||| ||||| || |||||||| | |||||| | || ||||||
Sbjct 133020483 CAGAGATTGATCTTTGCTGGCAAGCAGCTGGAAGATGGTCGCACTCTCTCTGACTACAAC 133020542
Query 23791 ATACAAAAAGAGTCCAC 23807
||||| ||||| |||||
Sbjct 133020543 ATACAGAAAGAATCCAC 133020559
>seq3
Length=181146889
Score = 107 bits (118), Expect = 1e-18
Identities = 146/204 (72%), Gaps = 0/204 (0%)
Strand=Plus/Minus
Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670
|||||||| || || |||||||| || || || || || || || || || || | |
Sbjct 29378907 ATGCAGATCTTTGTAAAAACCCTGACTGGCAAGACCATTACCCTGGAGGTAGAGCCAAGT 29378848
Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730
||||| | |||| | ||| ||| ||| ||||||||||| | || ||||| |||
Sbjct 29378847 GACACCATAGAAAACGTGAAATCAAAGATTCAAGACAAAGAAGGCATTCCTCCAGACCAA 29378788
Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790
||| | || || ||||||||||| || |||||||| | ||||| | | || |||||
Sbjct 29378787 CAGAGGTTGATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACGCTTTGTGACTACAAT 29378728
Query 23791 ATACAAAAAGAGTCCACATTACAT 23814
|| || || || ||||| || |||
Sbjct 29378727 ATCCAGAAGGAATCCACCTTGCAT 29378704
Score = 107 bits (118), Expect = 1e-18
Identities = 144/198 (73%), Gaps = 2/198 (1%)
Strand=Plus/Minus
Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670
|||||||| || || |||||||| || || || || || || || || || || | |
Sbjct 29379135 ATGCAGATCTTTGTGAAAACCCTGACTGGCAAGACCATTACCCTGGAGGTAGAGCCAAGT 29379076
Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729
|||||| |||| ||| | ||| |||| | | ||||||||||| | || ||||| ||
Sbjct 29379075 GACACTATTGAGAATGTCAAAGCAAAGA-TCCAAGACAAAGAAGGCATTCCTCCAGACCA 29379017
Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789
||| | || || ||||||||||| || |||||||| | ||||| | | ||||||||
Sbjct 29379016 GCAGAGGTTGATCTTTGCCGGCAAGCAGCTGGAAGATGGGCGCACCCTCTGTGATTACAA 29378957
Query 23790 CATACAAAAAGAGTCCAC 23807
|| || || || |||||
Sbjct 29378956 TATCCAGAAGGAATCCAC 29378939
Score = 98.7 bits (108), Expect = 7e-16
Identities = 140/197 (71%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670
|||||||| || || ||||| | || || || || || || || || || || || |
Sbjct 29378679 ATGCAGATCTTTGTAAAAACTTTGACTGGCAAGACCATTACCCTGGAGGTAGAGTCAAGT 29378620
Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730
||||| | |||| | ||| ||| ||| ||||||||||| | || ||||| |||
Sbjct 29378619 GACACCATAGAAAATGTGAAATCAAAGATTCAAGACAAAGAAGGCATTCCTCCAGACCAA 29378560
Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790
|| | || || ||||||||||| || |||||||| | ||||| | | || |||||
Sbjct 29378559 CAAAGGTTGATCTTTGCCGGCAAGCAGCTGGAAGATGGTCGCACCCTTTGTGACTACAAT 29378500
Query 23791 ATACAAAAAGAGTCCAC 23807
|| || |||||||| ||
Sbjct 29378499 ATCCAGAAAGAGTCTAC 29378483
>seq4
Length=159726490
Score = 104 bits (114), Expect = 2e-17
Identities = 144/199 (72%), Gaps = 2/199 (1%)
Strand=Plus/Plus
Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669
||||||||| || || |||||||| || || || || || || || || || || | |
Sbjct 6847467 AATGCAGATCTTTGTCAAAACCCTGACTGGCAAGACCATTACCCTAGAGGTAGAGCCAAG 6847526
Query 23670 GGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATC 23728
|||||| |||| ||| | ||| |||| | | |||||||||||| | || ||||| |
Sbjct 6847527 TGACACTATTGAGAATGTCAAAGCAAAGA-TCCAAGACAAAGAAGGTATCCCTCCAGACC 6847585
Query 23729 AACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACA 23788
| ||| | || || ||||||||||| || |||||||| | ||||| | || ||||
Sbjct 6847586 AGCAGAGGTTGATCTTTGCCGGCAAGCAGCTGGAAGATGGGCGCACCCTTTCAGACTACA 6847645
Query 23789 ACATACAAAAAGAGTCCAC 23807
| || || ||||| || ||
Sbjct 6847646 ATATCCAGAAAGAATCAAC 6847664
>seq12
Length=128359586
Score = 100 bits (110), Expect = 2e-16
Identities = 151/215 (70%), Gaps = 0/215 (0%)
Strand=Plus/Plus
Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667
|| ||||| || || || |||||||| || | ||||| ||||| || || | | | |||
Sbjct 101402629 AAGATGCAAATCTTTGTAAAAACCCTTACTTGGAAAACAATCACCCTTGAGGGTAAATCC 101402688
Query 23668 ACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGAT 23727
| || || |||||| | || ||||| || || |||||| | || || ||
Sbjct 101402689 AGTGATACCATTGAAAATGTGAAGGCTAAAATCCAGGATAAGGAAGGTATTCCCCCTGAC 101402748
Query 23728 CAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTAC 23787
|| ||| || | | ||||| || ||||| || ||||| |||| |||| || || ||
Sbjct 101402749 CAGCAGTGTCTGCTCTTTGCTGGTAAACAGCTTGAAGATGAACACACTCTATATGACTAT 101402808
Query 23788 AACATACAAAAAGAGTCCACATTACATTTAGTTTT 23822
||||| || |||||||||||||| || |||| ||
Sbjct 101402809 AACATCCAGAAAGAGTCCACATTGCACCTAGTGTT 101402843
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 337564558920764
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |