Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xenopus_20laevis_20[refseq_20GCF_5F001663975.1_202016-08-09] 108,033 sequences; 2,718,433,805 total letters Query= NC_030240.1 Length=128058 Score E Sequences producing significant alignments: (Bits) Value seq2 98.7 8e-16 seq3 87.8 1e-12 seq1 84.2 2e-11 >seq2 Length=179946965 Score = 98.7 bits (108), Expect = 8e-16 Identities = 102/134 (76%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 101012 CCGCCTCGCAATCTTAACACCATGTGCAAAGTTGATTCTTTTTGAATATTGTAATCGGCC 101071 || |||| ||| | | |||| ||||| ||| ||||| || |||||||||||||| | | Sbjct 133019449 CCACCTCTCAAACGGAGAACCAAGTGCAGAGTGGATTCCTTCTGAATATTGTAATCAGAC 133019390 Query 101072 ATAGTTTTGGAATCTTCCAATTGTTTGCCCGCATATATAAGCCTTTGTTGGTCTACGGGC 101131 | ||| || |||||||||||||||||| ||| | || | |||||||| || ||| Sbjct 133019389 AGGGTTCTGCCATCTTCCAATTGTTTGCCAGCAAAGATCAATCTTTGTTGATCAGGGGGA 133019330 Query 101132 ACGCCTTCTTTGTC 101145 | |||||| ||||| Sbjct 133019329 ATGCCTTCCTTGTC 133019316 Score = 87.8 bits (96), Expect = 1e-12 Identities = 113/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 101010 TGCCGCCTCGCAATCTTAACACCATGTGCAAAGTTGATTCTTTTTGAATATTGTAATCGG 101069 |||| |||| ||| | | |||| ||||| ||| ||||| |||||||| || || || | Sbjct 133019223 TGCCACCTCTCAAACGGAGAACCAAGTGCAGAGTGGATTCCTTTTGAATGTTATAGTCTG 133019164 Query 101070 CCATAGTTTTGGAATCTTCCAATTGTTTGCCCGCATATATAAGCCTTTGTTGGTCTACGG 101129 || ||| |||||||| |||||||| ||| | || | ||||||||||||| | Sbjct 133019163 ACAGGGTTCGACCATCTTCCAGCTGTTTGCCAGCAAAAATCAACCTTTGTTGGTCTGGAG 133019104 Query 101130 GCACGCCTTCTTTGTCGGCAATTTTTTGTTTCACAT 101165 | | ||||||||| || |||||| ||||||| Sbjct 133019103 GAATGCCTTCTTTATCCTGAATTTTAGCCTTCACAT 133019068 Score = 86.0 bits (94), Expect = 5e-12 Identities = 148/215 (69%), Gaps = 10/215 (5%) Strand=Plus/Minus Query 101030 ACCATGTGCAAAGTTGATTCTTTTTGAATATTGTAATCGGCCATAGTTTTGGAATCTTCC 101089 |||| ||||| ||| ||||| || ||||||||||| || | || ||| || ||||||| Sbjct 133020343 ACCAAGTGCAGAGTGGATTCCTTCTGAATATTGTAGTCAGACAGTGTTCTGCCATCTTCC 133020284 Query 101090 AATTGTTTGCCCGCATATATAAGCCTTTGTTGGTCTACGGGCACGCCTTCTTTGTCGGCA 101149 | ||| || || ||| | || | || || ||||| ||| | |||||||||||| Sbjct 133020283 AGTTGCTTACCAGCAAAAATTAATCTCTGCTGGTCAGGGGGAATGCCTTCTTTGTCTTGG 133020224 Query 101150 ATTTTTTGTTTCACATCGGCCACCGTCTCTGTGGACGTTGTT-----TCGACGGTAATAG 101204 ||||| ||| |||| | | || || || | ||| || | |||||| | Sbjct 133020223 ATTTTGGCTTTTACATTTTCAATTGTGTC-----ACTTGGTTCAACCTCAAGGGTAATTG 133020169 Query 101205 TTTTGCCCGTCAATGTTTTAATAAAAATTTGCATT 101239 | || || || ||||| || | ||| ||||||||| Sbjct 133020168 TCTTCCCAGTTAATGTCTTGACAAATATTTGCATT 133020134 >seq3 Length=181146889 Score = 87.8 bits (96), Expect = 1e-12 Identities = 140/199 (70%), Gaps = 4/199 (2%) Strand=Plus/Plus Query 101042 GTTGATTCTTTTTGAATATTGTAATCGGCCATAGTTTTGGA--ATCTTCCAATTGTTTGC 101099 || || ||||| || |||||||| || || || | || |||||||| || |||| Sbjct 29378483 GTAGACTCTTTCTGGATATTGTAGTCA--CAAAGGGTGCGACCATCTTCCAGCTGCTTGC 29378540 Query 101100 CCGCATATATAAGCCTTTGTTGGTCTACGGGCACGCCTTCTTTGTCGGCAATTTTTTGTT 101159 | ||| | || | ||||||||||||| || | |||||||||||| ||| ||| || Sbjct 29378541 CGGCAAAGATCAACCTTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATCTTTGATT 29378600 Query 101160 TCACATCGGCCACCGTCTCTGTGGACGTTGTTTCGACGGTAATAGTTTTGCCCGTCAATG 101219 |||||| | | || || | ||| | || | |||||| || ||||| ||||| | Sbjct 29378601 TCACATTTTCTATGGTGTCACTTGACTCTACCTCCAGGGTAATGGTCTTGCCAGTCAAAG 29378660 Query 101220 TTTTAATAAAAATTTGCAT 101238 |||| | ||| || ||||| Sbjct 29378661 TTTTTACAAAGATCTGCAT 29378679 >seq1 Length=219802468 Score = 84.2 bits (92), Expect = 2e-11 Identities = 111/154 (72%), Gaps = 0/154 (0%) Strand=Plus/Minus Query 101012 CCGCCTCGCAATCTTAACACCATGTGCAAAGTTGATTCTTTTTGAATATTGTAATCGGCC 101071 || |||| ||| | | |||| ||||| ||| ||||| |||||||| |||||||| | | Sbjct 160683847 CCCCCTCTCAAACGGAGAACCAAGTGCAGAGTGGATTCCTTTTGAATGTTGTAATCTGAC 160683788 Query 101072 ATAGTTTTGGAATCTTCCAATTGTTTGCCCGCATATATAAGCCTTTGTTGGTCTACGGGC 101131 | ||| ||| |||| |||||||| || | || | |||||||||||| ||| Sbjct 160683787 AGGGTTCGTCCATCCTCCAGCTGTTTGCCAGCGAAGATCAACCTTTGTTGGTCAGGGGGA 160683728 Query 101132 ACGCCTTCTTTGTCGGCAATTTTTTGTTTCACAT 101165 | ||||||||| || ||||| |||||||| Sbjct 160683727 ATGCCTTCTTTATCTTGGATTTTAGCTTTCACAT 160683694 Score = 84.2 bits (92), Expect = 2e-11 Identities = 88/116 (76%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 101030 ACCATGTGCAAAGTTGATTCTTTTTGAATATTGTAATCGGCCATAGTTTTGGAATCTTCC 101089 |||| ||||| ||| ||||| || |||||||| || || | || ||| | ||||||| Sbjct 160684285 ACCAAGTGCAGAGTAGATTCCTTCTGAATATTATAGTCTGACAGGGTTCTTCCATCTTCC 160684226 Query 101090 AATTGTTTGCCCGCATATATAAGCCTTTGTTGGTCTACGGGCACGCCTTCTTTGTC 101145 ||||||||||| ||| |||| | || ||||| || ||| | |||||| ||||| Sbjct 160684225 AATTGTTTGCCAGCAAATATCAATCTCTGTTGATCAGGGGGAATGCCTTCCTTGTC 160684170 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 409121419211547