Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xenopus_20laevis_20[refseq_20GCF_5F001663975.1_202016-08-09] 108,033 sequences; 2,718,433,805 total letters Query= NC_030394.2 Length=126965 Score E Sequences producing significant alignments: (Bits) Value seq11 132 4e-26 >seq11 Length=155008753 Score = 132 bits (146), Expect = 4e-26 Identities = 133/173 (77%), Gaps = 0/173 (0%) Strand=Plus/Plus Query 29717 CCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGCACC 29776 || ||||||||||| |||||||| ||||| | | ||| || ||||||||||||||||| Sbjct 107958869 CCAGTGACGTGAGCAATCATGTAAGTGAGTAAGGCGTAACTAGCGATGTTAAAGGGCACT 107958928 Query 29777 CCGAGCCCCATGTCCCCTGACCTCTGGTAGAGCTGGCACGAGAGCTCTCCGTCGCTCACG 29836 || || |||||||| ||||| |||||||| ||||||||||| | |||| ||| ||| Sbjct 107958929 CCCAGGCCCATGTCTCCTGATCTCTGGTACAGCTGGCACGATAACTCTTTGTCAACTACG 107958988 Query 29837 TAAAACTGACACATGGCATGGCACGGAGGAAGGGCCATGAGACCCAAGTCTTT 29889 || ||||| || | | || || || || || ||||| ||| | |||||| Sbjct 107958989 TAGAACTGGCAGAGAGTGTGACAAGGCGGCAGAGCCATAAGAGAAATGTCTTT 107959041 Score = 95.1 bits (104), Expect = 1e-14 Identities = 105/140 (75%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 30017 AAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAG 30076 || ||||||||||| || || ||||||||||| || ||||| || || ||| ||| Sbjct 107960658 AAGTGCCTCCACTGAAAACCATACACCGGTCCAAGATCTCCTTCCTCTCTGGTTGAGAAT 107960717 Query 30077 CCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCG 30136 || |||||||||||| || | ||| || || || ||||| |||||||| || || | Sbjct 107960718 CCTTGCTTGTCCAAAAATTCCCGGGAGCCATTTGCATCCCAAATCTTTACGCCTTTTGCA 107960777 Query 30137 GAGAGCTCTTTGGAGTTTGT 30156 || || ||||| ||||| || Sbjct 107960778 GAAAGTTCTTTTGAGTTGGT 107960797 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 405628424334238