Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xenopus_20laevis_20[refseq_20GCF_5F001663975.1_202016-08-09] 108,033 sequences; 2,718,433,805 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq9 98.7 8e-16 seq10 95.1 1e-14 >seq9 Length=159361991 Score = 98.7 bits (108), Expect = 8e-16 Identities = 96/124 (77%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 4570 CTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAAACCTCTCTTTT 4629 |||| ||||||||||| ||||||||||| || || | ||| ||||| | |||| || | Sbjct 138039860 CTTCATCTCTGCTAATAAGTTCGTTAGAGAAAGTGAGTCCAGGCATCAGCCCTCGTTTCT 138039801 Query 4630 TAAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTACGGCGGCAAACG 4689 | ||||| ||||| | |||||||| ||||| || || || ||||| || || ||||| | Sbjct 138039800 TCAGCCAGAATATGGAAGCAAATGAACCAGAGAAAAAGATCCCTTCAACAGCAGCAAAGG 138039741 Query 4690 CTAC 4693 | || Sbjct 138039740 CCAC 138039737 Score = 91.5 bits (100), Expect = 1e-13 Identities = 98/130 (75%), Gaps = 0/130 (0%) Strand=Plus/Minus Query 4570 CTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAAACCTCTCTTTT 4629 |||| ||||||||||| ||||| ||||| || || | ||| ||||| | || | || | Sbjct 138027424 CTTCATCTCTGCTAATAAGTTCATTAGAGAAAGTGAGTCCAGGCATCAGTCCACGTTTCT 138027365 Query 4630 TAAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTACGGCGGCAAACG 4689 | |||||||| || | |||||||| || || ||||| || ||||| || || ||||| | Sbjct 138027364 TCAGCCAAAAAATGGATGCAAATGAACCGGAGAAGAAGATCCCTTCAACAGCAGCAAATG 138027305 Query 4690 CTACTAATCG 4699 | || | ||| Sbjct 138027304 CCACCACTCG 138027295 Score = 89.7 bits (98), Expect = 4e-13 Identities = 84/107 (79%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 4809 GGGTCTTGAATATAAGTGTCTATTAGTAGGCTATACATTTCAGAATGTATATTTTCTATA 4868 || || | |||||| ||||| || || || || |||||||||||||| || || || || Sbjct 138038981 GGATCCTTAATATATGTGTCAATCAGAAGACTGTACATTTCAGAATGAATGTTCTCCATT 138038922 Query 4869 GCAATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTACTTGAACTTC 4915 ||||| ||||| || |||||||| | | | || |||||||| ||||| Sbjct 138038921 GCAATTTGAAAACCATAAAAGCAGCGAACCTCGGTTACTTGCACTTC 138038875 Score = 86.0 bits (94), Expect = 5e-12 Identities = 94/125 (75%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 4809 GGGTCTTGAATATAAGTGTCTATTAGTAGGCTATACATTTCAGAATGTATATTTTCTATA 4868 || |||| ||| || ||||| || || ||||| |||||||||||||| || || || || Sbjct 138026820 GGATCTTTAATGTAGGTGTCAATAAGAAGGCTGTACATTTCAGAATGAATGTTCTCCATT 138026761 Query 4869 GCAATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTACTTGAACTTCGTTACAAAATCTT 4928 || || || || || |||||||| | ||| || || ||||| || || || | ||| || Sbjct 138026760 GCGATTTGGAAGCCATAAAAGCAGCGAGCCTCAGTAACTTGCACCTCCTTGCTAAACCTC 138026701 Query 4929 TCTAC 4933 || || Sbjct 138026700 TCCAC 138026696 Score = 84.2 bits (92), Expect = 2e-11 Identities = 69/84 (82%), Gaps = 0/84 (0%) Strand=Plus/Minus Query 4931 TACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAAAAAACGCCAAAACATGAGATAT 4990 ||| | ||| ||||||||||| || ||||| ||||||||||| ||||| |||||||| || Sbjct 138025971 TACCAGGTTCTCGTTTACTATCCCATCACTAGCTGCAAAAAAGGCCAACACATGAGAGAT 138025912 Query 4991 AAAGTACTGTTCGTCAGGCTTAAG 5014 |||||| |||||| | ||| || Sbjct 138025911 AAAGTATCTTTCGTCTGTCTTCAG 138025888 >seq10 Length=136570856 Score = 95.1 bits (104), Expect = 1e-14 Identities = 99/130 (76%), Gaps = 0/130 (0%) Strand=Plus/Minus Query 4570 CTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAAACCTCTCTTTT 4629 |||| ||||||||||| ||||| ||||| || || | ||| ||||| | || | || | Sbjct 119052165 CTTCATCTCTGCTAATAAGTTCATTAGAGAAAGTGAGTCCAGGCATCAGCCCCCGTTTCT 119052106 Query 4630 TAAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTACGGCGGCAAACG 4689 | |||||||| || | |||||||| ||||| ||||| || ||||| || || ||||| | Sbjct 119052105 TCAGCCAAAAAATGGATGCAAATGAGCCAGAGAAGAAAATACCTTCAACAGCAGCAAATG 119052046 Query 4690 CTACTAATCG 4699 | || | ||| Sbjct 119052045 CAACAACTCG 119052036 Score = 89.7 bits (98), Expect = 4e-13 Identities = 70/84 (83%), Gaps = 0/84 (0%) Strand=Plus/Minus Query 4931 TACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAAAAAACGCCAAAACATGAGATAT 4990 ||| | |||||| |||||||| || || |||||||||||||| ||||| ||||||||||| Sbjct 119050731 TACCAGGTTTTCATTTACTATGCCATCGCTGGCTGCAAAAAAGGCCAACACATGAGATAT 119050672 Query 4991 AAAGTACTGTTCGTCAGGCTTAAG 5014 |||||| | ||| || |||||| Sbjct 119050671 AAAGTATTTTTCTTCTTTCTTAAG 119050648 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 426487324209989