Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xenopus_20laevis_20[refseq_20GCF_5F001663975.1_202016-08-09] 108,033 sequences; 2,718,433,805 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq4 134 2e-26 seq3 120 4e-22 seq12 107 3e-18 seq9 105 9e-18 seq10 98.7 1e-15 >seq4 Length=159726490 Score = 134 bits (148), Expect = 2e-26 Identities = 134/174 (77%), Gaps = 0/174 (0%) Strand=Plus/Plus Query 78742 CACTAAATAGtttttttGTTTCCTTGTGTAGATTAGATACAGCTATTCTTGCAGCTAGAA 78801 ||||||||| ||| ||||| |||||||| | ||||| |||||||| | ||||| |||| Sbjct 158384213 CACTAAATATTTTCTTTGTCTCCTTGTGCAAGTTAGAAACAGCTATGCGAGCAGCCAGAA 158384272 Query 78802 TAGCATAATCAGGATGTTGTGTAGTACAAGTGGCTGCTATTTCTGCCGCTAAAATATCTA 78861 | ||||| || ||||||| ||| || ||||||||| | || || || | |||| | Sbjct 158384273 TGGCATAGTCTGGATGTTTTGTTGTCAGGGTGGCTGCTGTCTCCGCTGCCAGGGTATCCA 158384332 Query 78862 ACTCTATAGTTGTGACCCCATTATATAGTCCTTGAATAACTTTCATGGCGATTT 78915 ||||||||||||||| ||| | || || || ||||| |||||||| | |||| Sbjct 158384333 GCTCTATAGTTGTGACTCCACTGTAAAGACCCTGAATTACTTTCATAGTAATTT 158384386 Score = 118 bits (130), Expect = 1e-21 Identities = 107/135 (79%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 77127 TGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 77186 || || || ||||| | ||||| || ||||| ||||| ||||||||||| || | |||| Sbjct 158378026 TGGAACTCGCCAGAAAGGACTCTGCGTGTGTATATATTGCTGGTATATGGCTCAATAGAT 158378085 Query 77187 TCATTGTTTCCCAAAATTTGAGCAGTAGAAGCAGTTGGCATAGGTGCCACCAATAAACTA 77246 ||||| || |||| ||||||||||| |||||||| |||||||| |||| | ||||| Sbjct 158378086 TCATTATTGCCCAGGATTTGAGCAGTGGAAGCAGTGGGCATAGGAGCCAGAAGCAAACTG 158378145 Query 77247 TTTCTGAGACCATGT 77261 || |||| |||||| Sbjct 158378146 TTCCTGATGCCATGT 158378160 Score = 107 bits (118), Expect = 3e-18 Identities = 104/134 (78%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 78003 ACTCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTATGT 78062 || ||||||||||||||||| |||||||| | ||| |||||||| | || ||| || Sbjct 158380757 ACACGTTTCATAAAGAGATCCGGTATCCACATGGCATAGAATAGATCCCTGGCTCTCTGC 158380816 Query 78063 TCTTCATTTCCTGTATTCTTTTTAAGATCGAGAAACTCCATAATATCAGAATGCCATGGT 78122 || || ||||| ||||||||||| || || || || || | | |||| ||||||| ||| Sbjct 158380817 TCCTCCTTTCCAGTATTCTTTTTTAGGTCCAGGAATTCAAACACATCATAATGCCAAGGT 158380876 Query 78123 TCTAGATATATTGC 78136 || || ||||| || Sbjct 158380877 TCCAGGTATATGGC 158380890 Score = 105 bits (116), Expect = 9e-18 Identities = 126/171 (74%), Gaps = 0/171 (0%) Strand=Plus/Plus Query 76849 TCCATCCGTAGAAATGCATGCTTGTCAGTTTGGAATAACTAGGATCGGCTATATGAATAT 76908 |||| || ||||| ||||| || ||||| ||| ||| | || || |||| |||||| | Sbjct 158376344 TCCAGCCATAGAAGTGCATACTGGTCAGCTTGCCATAGTTGGGTTCTGCTACATGAATGT 158376403 Query 76909 TCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGCCGCCATTTTTATAATGGTCT 76968 ||| ||||| || ||||| |||||||||||||| || || ||||| | || | |||| Sbjct 158376404 TCAATGACTGGCTCTGATCAATGAAAGCTCCTCTGTCTGCTGCCATAGTAATGACCGTCT 158376463 Query 76969 TTTGAGGAATTTCCCAAATAGTTTTGAAAACTTGTTTGATATCATCTGGAA 77019 | |||| |||||||| | || ||| | | | ||| | |||| | |||| Sbjct 158376464 TCTGAGATATTTCCCACACGGTCTTGTACAGCTCTTTCAGATCAGCAGGAA 158376514 Score = 87.8 bits (96), Expect = 2e-12 Identities = 102/138 (74%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 78399 GTTCCTGCATTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGAAAGTAGATTG 78458 || || ||||| || | ||| ||||| |||||||| ||||||||||| || | |||||| Sbjct 158382226 GTACCAGCATTGAACAGTGTAGGAGAAGCATGCGTGAACCATTTTTCTGACAACAGATTG 158382285 Query 78459 TATGTTTCAATAGCTGATTCTATGTCCCATTGATGAATTCCTACCGCTACACGCATCAAC 78518 || ||||| ||||| | || || || || ||| || || || | ||| | ||||| | Sbjct 158382286 TAGGTTTCGATAGCAGCATCAATATCAGTTTTATGTATACCAACAGATACCCTCATCAGC 158382345 Query 78519 ATATGCTGAGGTCTTTCA 78536 || || || || | |||| Sbjct 158382346 ATGTGTTGTGGCCGTTCA 158382363 >seq3 Length=181146889 Score = 120 bits (132), Expect = 4e-22 Identities = 131/174 (75%), Gaps = 0/174 (0%) Strand=Plus/Minus Query 78742 CACTAAATAGtttttttGTTTCCTTGTGTAGATTAGATACAGCTATTCTTGCAGCTAGAA 78801 |||||||| ||| |||||||||||||| || || || ||||||| | ||||| |||| Sbjct 172424806 CACTAAATGTTTTCTTTGTTTCCTTGTGCAGGTTGGAAACAGCTACGCGAGCAGCCAGAA 172424747 Query 78802 TAGCATAATCAGGATGTTGTGTAGTACAAGTGGCTGCTATTTCTGCCGCTAAAATATCTA 78861 | |||||||| ||||||| || || |||||||| | || || || | | || | Sbjct 172424746 TGGCATAATCTGGATGTTTAGTTGTCAGGGTGGCTGCCGTCTCCGCTGCAAGTGTGTCCA 172424687 Query 78862 ACTCTATAGTTGTGACCCCATTATATAGTCCTTGAATAACTTTCATGGCGATTT 78915 ||||||||||||||||||| | || || || || || |||||||| | |||| Sbjct 172424686 GCTCTATAGTTGTGACCCCACTGTAAAGACCCTGTATTACTTTCATAGTAATTT 172424633 Score = 111 bits (122), Expect = 2e-19 Identities = 105/134 (78%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 78003 ACTCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTATGT 78062 || |||||||||||||||||||||||||| | ||| |||||||| | || ||| || Sbjct 172428926 ACACGTTTCATAAAGAGATCAGGTATCCACATGGCATAGAATAGATCCCTGGCTCTCTGC 172428867 Query 78063 TCTTCATTTCCTGTATTCTTTTTAAGATCGAGAAACTCCATAATATCAGAATGCCATGGT 78122 || || ||||| || |||||||| || || || || || | | |||| ||||||| ||| Sbjct 172428866 TCCTCCTTTCCAGTGTTCTTTTTTAGGTCCAGGAAATCAAACACATCATAATGCCACGGT 172428807 Query 78123 TCTAGATATATTGC 78136 || |||||||| || Sbjct 172428806 TCCAGATATATGGC 172428793 Score = 100 bits (110), Expect = 4e-16 Identities = 102/133 (77%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 78399 GTTCCTGCATTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGAAAGTAGATTG 78458 || || ||||| || | ||| ||||| ||||| || |||||||||||||| | |||||| Sbjct 172427172 GTACCAGCATTGAACAGTGTGGGAGAAGCATGTGTGAACCATTTTTCAGACAACAGATTG 172427113 Query 78459 TATGTTTCAATAGCTGATTCTATGTCCCATTGATGAATTCCTACCGCTACACGCATCAAC 78518 || ||||||||||||| || ||||| || ||| || || || | ||| | ||||| | Sbjct 172427112 TAGGTTTCAATAGCTGCATCAATGTCAGTTTTATGGATGCCAACGGATACCCTCATCAGC 172427053 Query 78519 ATATGCTGAGGTC 78531 || || || |||| Sbjct 172427052 ATGTGTTGTGGTC 172427040 Score = 100 bits (110), Expect = 4e-16 Identities = 102/133 (77%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 77127 TGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 77186 || || |||||||| | ||||| || ||||| ||||| ||||||||||| || | ||| Sbjct 172440455 TGGAACTCTCCAGAGAGGACTCTGCGTGTGTATATATTGCTGGTATATGGCTCAATGGAT 172440396 Query 77187 TCATTGTTTCCCAAAATTTGAGCAGTAGAAGCAGTTGGCATAGGTGCCACCAATAAACTA 77246 ||||| || |||| ||||||||||| ||||| || ||||| || || | | ||||| Sbjct 172440395 TCATTATTGCCCAGGATTTGAGCAGTGGAAGCTGTGGGCATTGGAGCAAGAAGCAAACTG 172440336 Query 77247 TTTCTGAGACCAT 77259 || |||| |||| Sbjct 172440335 TTCCTGATGCCAT 172440323 Score = 96.9 bits (106), Expect = 5e-15 Identities = 103/136 (76%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 76849 TCCATCCGTAGAAATGCATGCTTGTCAGTTTGGAATAACTAGGATCGGCTATATGAATAT 76908 |||| || ||||| ||||| || ||||| ||| ||| | || || |||| ||| || | Sbjct 172441400 TCCAGCCATAGAAGTGCATACTGGTCAGCTTGCCATAGTTGGGTTCTGCTACATGGATGT 172441341 Query 76909 TCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGCCGCCATTTTTATAATGGTCT 76968 ||| ||||| || ||||| |||||||||||||| || || |||||| | || | |||| Sbjct 172441340 TCAATGACTGGCTCTGATCAATGAAAGCTCCTCTGTCTGCTGCCATTGTAATGACTGTCT 172441281 Query 76969 TTTGAGGAATTTCCCA 76984 | || | |||||||| Sbjct 172441280 TCTGTGATATTTCCCA 172441265 >seq12 Length=128359586 Score = 107 bits (118), Expect = 3e-18 Identities = 95/119 (80%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 48165 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGACCGGGCATTAGTCCACGTTTTTTG 48224 ||||||||||| || | ||||| ||||| ||||| || ||||| || || | ||| || Sbjct 109014791 TCATCTCTACTGATCAGCTCGTTGGAAAAGGTGAGTCCAGGCATGAGACCCCTTTTCTTT 109014850 Query 48225 AGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACGGCCGCAAATGC 48283 ||||| || ||||| || || || ||||| |||||||| |||||||| || |||||||| Sbjct 109014851 AGCCAGAAAATTGCAGCAAAGGACCCAGAGAAGAATATTCCTTCTACTGCAGCAAATGC 109014909 >seq9 Length=159361991 Score = 105 bits (116), Expect = 9e-18 Identities = 96/121 (79%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 48163 CTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGACCGGGCATTAGTCCACGTTTTT 48222 |||||||||| ||||| | ||| ||||| || ||||| || ||||| ||||||||||| | Sbjct 138027424 CTTCATCTCTGCTAATAAGTTCATTAGAGAAAGTGAGTCCAGGCATCAGTCCACGTTTCT 138027365 Query 48223 TGAGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACGGCCGCAAATG 48282 | |||||||| || | || || || || || ||||| || ||||| || || ||||||| Sbjct 138027364 TCAGCCAAAAAATGGATGCAAATGAACCGGAGAAGAAGATCCCTTCAACAGCAGCAAATG 138027305 Query 48283 C 48283 | Sbjct 138027304 C 138027304 Score = 93.3 bits (102), Expect = 6e-14 Identities = 105/140 (75%), Gaps = 3/140 (2%) Strand=Plus/Minus Query 47794 TTTAAAAGTCAACATCTAAAGAAAAATGATTATCTTCTTGA---GACATAACTCCCATTT 47850 ||||||||||| | || | | ||| ||||||| | | ||||| || ||||| | Sbjct 138029415 TTTAAAAGTCAGCGTCCAGTGTGAAAGTGTTATCTTTTGGCTTTGACATGACACCCATCT 138029356 Query 47851 TTTGATATTCACCCACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTTT 47910 | || |||||||| || | ||||| || || ||||| || |||||||| || || |||| Sbjct 138029355 TCTGGTATTCACCAACTCTCTTCTCAAAGAAGTTAGTCTTTCCTTCCAAAGAGATGTTTT 138029296 Query 47911 CCATAAAATCAAATGGATTA 47930 |||| || |||||||||||| Sbjct 138029295 CCATGAAGTCAAATGGATTA 138029276 Score = 86.0 bits (94), Expect = 9e-12 Identities = 104/140 (74%), Gaps = 5/140 (4%) Strand=Plus/Minus Query 47794 TTTAAAAGTCAACATCTAAAGAAAAATGATTATCTT----CTTGAGACATAACTCCCATT 47849 ||||||||||| ||| || || || ||||| || |||| | ||| || ||||| Sbjct 138044454 TTTAAAAGTCAGCATTTAGAGTGAATTGATTTTCCGTGGCCTTG-GCCATGACACCCATC 138044396 Query 47850 TTTTGATATTCACCCACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTT 47909 || || |||||||| || ||||| || ||||| || || ||||| || || || ||| Sbjct 138044395 TTCTGGTATTCACCAACTTTCTTCTCAAAGAAATTGGTCTTTCCTTCTAAGGAGATGTTT 138044336 Query 47910 TCCATAAAATCAAATGGATT 47929 ||||| || ||||||||||| Sbjct 138044335 TCCATGAAGTCAAATGGATT 138044316 >seq10 Length=136570856 Score = 98.7 bits (108), Expect = 1e-15 Identities = 106/139 (76%), Gaps = 5/139 (4%) Strand=Plus/Minus Query 47795 TTAAAAGTCAACATCTAAAGAAAAATGATTATCTT----CTTGAGACATAACTCCCATTT 47850 ||| |||||| |||| | | |||| || |||| |||| |||||||| ||||| | Sbjct 119053703 TTAGAAGTCAGCATCCAGTGTAAAAGTGTTGTCTTTTGCCTTG-GACATAACACCCATCT 119053645 Query 47851 TTTGATATTCACCCACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTTT 47910 | || ||||| || || ||||| ||||| ||||| || ||||||||||| || |||| Sbjct 119053644 TCTGGTATTCTCCAACTTTCTTCTCAAAAAAGTTAGTCTTTCCTTCCAATGAGATGTTTT 119053585 Query 47911 CCATAAAATCAAATGGATT 47929 |||| || ||||||||||| Sbjct 119053584 CCATGAAGTCAAATGGATT 119053566 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 693730710569120