Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xenopus_20laevis_20[refseq_20GCF_5F001663975.1_202016-08-09] 108,033 sequences; 2,718,433,805 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq4 118 2e-21 seq3 111 2e-19 seq12 107 3e-18 seq10 96.9 5e-15 seq9 96.9 5e-15 seq17 87.8 3e-12 >seq4 Length=159726490 Score = 118 bits (130), Expect = 2e-21 Identities = 107/135 (79%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 75722 TGAAATTCTCCAGACAATACTCTTCGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 75781 || || || ||||| | ||||| || ||||| ||||| ||||||||||| || | |||| Sbjct 158378026 TGGAACTCGCCAGAAAGGACTCTGCGTGTGTATATATTGCTGGTATATGGCTCAATAGAT 158378085 Query 75782 TCATTGTTTCCCAAAATTTGAGCAGTTGAAGCAGTCGGCATAGGTGCCACCAATAAACTA 75841 ||||| || |||| ||||||||||| |||||||| |||||||| |||| | ||||| Sbjct 158378086 TCATTATTGCCCAGGATTTGAGCAGTGGAAGCAGTGGGCATAGGAGCCAGAAGCAAACTG 158378145 Query 75842 TTTCTGAGACCATGT 75856 || |||| |||||| Sbjct 158378146 TTCCTGATGCCATGT 158378160 Score = 107 bits (118), Expect = 3e-18 Identities = 104/134 (78%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 76598 ACCCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTACGT 76657 || ||||||||||||||||| |||||||| | ||| |||||||| | || ||| | Sbjct 158380757 ACACGTTTCATAAAGAGATCCGGTATCCACATGGCATAGAATAGATCCCTGGCTCTCTGC 158380816 Query 76658 TCTTCATTTCCTGTATTCTTTTTAAGATCTAGGAACTCCATAATATCAGAATGCCATGGT 76717 || || ||||| ||||||||||| || || ||||| || | | |||| ||||||| ||| Sbjct 158380817 TCCTCCTTTCCAGTATTCTTTTTTAGGTCCAGGAATTCAAACACATCATAATGCCAAGGT 158380876 Query 76718 TCTAGATATATCGC 76731 || || ||||| || Sbjct 158380877 TCCAGGTATATGGC 158380890 Score = 104 bits (114), Expect = 3e-17 Identities = 129/177 (73%), Gaps = 0/177 (0%) Strand=Plus/Plus Query 75444 TCCATCCGTAGAAATGCATGCTTGTTAGTTTGGAATAACTCGGATCGGCTATATGAATAT 75503 |||| || ||||| ||||| || || || ||| ||| | || || |||| |||||| | Sbjct 158376344 TCCAGCCATAGAAGTGCATACTGGTCAGCTTGCCATAGTTGGGTTCTGCTACATGAATGT 158376403 Query 75504 TCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGCCGCCATTTTTATAATGGTCT 75563 ||| ||||| || ||||| |||||||||||||| || || ||||| | || | |||| Sbjct 158376404 TCAATGACTGGCTCTGATCAATGAAAGCTCCTCTGTCTGCTGCCATAGTAATGACCGTCT 158376463 Query 75564 TTTGAGGAATTTCCCAAATAGTTTTGAAAACTTGTTTGATATCATCTGGAAGATTTG 75620 | |||| |||||||| | || ||| | | | ||| | |||| | |||| || || Sbjct 158376464 TCTGAGATATTTCCCACACGGTCTTGTACAGCTCTTTCAGATCAGCAGGAATATCTG 158376520 Score = 104 bits (114), Expect = 3e-17 Identities = 105/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 76994 GTTCCTGCATTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGATTG 77053 || || ||||| |||| ||||||||| ||||| |||||||||||||| || | |||||| Sbjct 158382226 GTACCAGCATTGAACAGTGTAGGAGAAGCATGCGTGAACCATTTTTCTGACAACAGATTG 158382285 Query 77054 TATGTTTCAATAACTGCTTCTATATCCCATTGATGAATTCCTACAGCGACACGCATCAAC 77113 || ||||| ||| | || || ||||| || ||| || || |||| || | ||||| | Sbjct 158382286 TAGGTTTCGATAGCAGCATCAATATCAGTTTTATGTATACCAACAGATACCCTCATCAGC 158382345 Query 77114 ATATGCTGAGGTCGTTC 77130 || || || || ||||| Sbjct 158382346 ATGTGTTGTGGCCGTTC 158382362 >seq3 Length=181146889 Score = 111 bits (122), Expect = 2e-19 Identities = 105/134 (78%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 76598 ACCCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTACGT 76657 || |||||||||||||||||||||||||| | ||| |||||||| | || ||| | Sbjct 172428926 ACACGTTTCATAAAGAGATCAGGTATCCACATGGCATAGAATAGATCCCTGGCTCTCTGC 172428867 Query 76658 TCTTCATTTCCTGTATTCTTTTTAAGATCTAGGAACTCCATAATATCAGAATGCCATGGT 76717 || || ||||| || |||||||| || || ||||| || | | |||| ||||||| ||| Sbjct 172428866 TCCTCCTTTCCAGTGTTCTTTTTTAGGTCCAGGAAATCAAACACATCATAATGCCACGGT 172428807 Query 76718 TCTAGATATATCGC 76731 || |||||||| || Sbjct 172428806 TCCAGATATATGGC 172428793 Score = 105 bits (116), Expect = 1e-17 Identities = 106/138 (77%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 76994 GTTCCTGCATTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGATTG 77053 || || ||||| |||| ||| ||||| ||||| ||||||||||||||||| | |||||| Sbjct 172427172 GTACCAGCATTGAACAGTGTGGGAGAAGCATGTGTGAACCATTTTTCAGACAACAGATTG 172427113 Query 77054 TATGTTTCAATAACTGCTTCTATATCCCATTGATGAATTCCTACAGCGACACGCATCAAC 77113 || ||||||||| |||| || || || || ||| || || || | || | ||||| | Sbjct 172427112 TAGGTTTCAATAGCTGCATCAATGTCAGTTTTATGGATGCCAACGGATACCCTCATCAGC 172427053 Query 77114 ATATGCTGAGGTCGTTCT 77131 || || || ||||| ||| Sbjct 172427052 ATGTGTTGTGGTCGCTCT 172427035 Score = 100 bits (110), Expect = 4e-16 Identities = 102/133 (77%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 75722 TGAAATTCTCCAGACAATACTCTTCGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 75781 || || |||||||| | ||||| || ||||| ||||| ||||||||||| || | ||| Sbjct 172440455 TGGAACTCTCCAGAGAGGACTCTGCGTGTGTATATATTGCTGGTATATGGCTCAATGGAT 172440396 Query 75782 TCATTGTTTCCCAAAATTTGAGCAGTTGAAGCAGTCGGCATAGGTGCCACCAATAAACTA 75841 ||||| || |||| ||||||||||| ||||| || ||||| || || | | ||||| Sbjct 172440395 TCATTATTGCCCAGGATTTGAGCAGTGGAAGCTGTGGGCATTGGAGCAAGAAGCAAACTG 172440336 Query 75842 TTTCTGAGACCAT 75854 || |||| |||| Sbjct 172440335 TTCCTGATGCCAT 172440323 Score = 98.7 bits (108), Expect = 1e-15 Identities = 125/172 (73%), Gaps = 0/172 (0%) Strand=Plus/Minus Query 77339 CTAAATAGtttttttGTTTCCTTGTGTAGATTCGATACGGCTATTCTAGCAGCTAGAATT 77398 |||||| ||| |||||||||||||| || || || || |||| | |||||| ||||| Sbjct 172424804 CTAAATGTTTTCTTTGTTTCCTTGTGCAGGTTGGAAACAGCTACGCGAGCAGCCAGAATG 172424745 Query 77399 GCATAGTCAGGATGTTGTGTAGTGCAGGTGGCTGCTATTTCTGCCGCTAAAGTATCTAAT 77458 ||||| || ||||||| || || ||||||||| | || || || | || || | Sbjct 172424744 GCATAATCTGGATGTTTAGTTGTCAGGGTGGCTGCCGTCTCCGCTGCAAGTGTGTCCAGC 172424685 Query 77459 TCTATAGTAGTAACTCCGTTATATAGCCCTTGAATAACTTTCATGGCTATTT 77510 |||||||| || || || | || || || || || |||||||| | |||| Sbjct 172424684 TCTATAGTTGTGACCCCACTGTAAAGACCCTGTATTACTTTCATAGTAATTT 172424633 Score = 95.1 bits (104), Expect = 2e-14 Identities = 127/177 (72%), Gaps = 0/177 (0%) Strand=Plus/Minus Query 75444 TCCATCCGTAGAAATGCATGCTTGTTAGTTTGGAATAACTCGGATCGGCTATATGAATAT 75503 |||| || ||||| ||||| || || || ||| ||| | || || |||| ||| || | Sbjct 172441400 TCCAGCCATAGAAGTGCATACTGGTCAGCTTGCCATAGTTGGGTTCTGCTACATGGATGT 172441341 Query 75504 TCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGCCGCCATTTTTATAATGGTCT 75563 ||| ||||| || ||||| |||||||||||||| || || |||||| | || | |||| Sbjct 172441340 TCAATGACTGGCTCTGATCAATGAAAGCTCCTCTGTCTGCTGCCATTGTAATGACTGTCT 172441281 Query 75564 TTTGAGGAATTTCCCAAATAGTTTTGAAAACTTGTTTGATATCATCTGGAAGATTTG 75620 | || | |||||||| | || ||| | | | ||| | ||| | |||| || || Sbjct 172441280 TCTGTGATATTTCCCACACGGTCTTGTACAGCTCTTTCAGTTCAGCAGGAATATCTG 172441224 >seq12 Length=128359586 Score = 107 bits (118), Expect = 3e-18 Identities = 104/134 (78%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 46654 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAGGCATTAGTCCACGCTTTTTG 46713 ||||||||||| || | ||||| ||||| ||||| |||||||| || || | || || Sbjct 109014791 TCATCTCTACTGATCAGCTCGTTGGAAAAGGTGAGTCCAGGCATGAGACCCCTTTTCTTT 109014850 Query 46714 AGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACAGCCGCGAATGCG 46773 ||||| || || || || || || ||||| |||||||| |||||||| || || ||||| Sbjct 109014851 AGCCAGAAAATTGCAGCAAAGGACCCAGAGAAGAATATTCCTTCTACTGCAGCAAATGCC 109014910 Query 46774 ACAAGTCTCTCTCC 46787 || | ||| ||||| Sbjct 109014911 ACGACTCTTTCTCC 109014924 >seq10 Length=136570856 Score = 96.9 bits (106), Expect = 5e-15 Identities = 79/96 (82%), Gaps = 0/96 (0%) Strand=Plus/Minus Query 47127 TACTTCTTCAGCTGTCCAGAATGACGCCTCTGCTTTTTTATACATATTCCATATATCACG 47186 ||| || ||||| ||||||||||| || |||||||| || ||||| | ||| || ||| | Sbjct 119050097 TACCTCCTCAGCAGTCCAGAATGAAGCTTCTGCTTTCTTGTACATTTGCCAGATGTCATG 119050038 Query 47187 ATATTGGATCGGAAAAATAACAAATCTATTTGGATT 47222 ||||||||| || || || |||||||||| |||||| Sbjct 119050037 ATATTGGATGGGGAAGATCACAAATCTATGTGGATT 119050002 Score = 96.9 bits (106), Expect = 5e-15 Identities = 114/153 (75%), Gaps = 5/153 (3%) Strand=Plus/Minus Query 46284 TTAAAAGTCGACATCTAAAGAAAAATGATTATCTT----CTTGTGACATAACTCCCATTT 46339 ||| ||||| |||| | | |||| || |||| |||| |||||||| ||||| | Sbjct 119053703 TTAGAAGTCAGCATCCAGTGTAAAAGTGTTGTCTTTTGCCTTG-GACATAACACCCATCT 119053645 Query 46340 TTTGGTATTCACCTACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTTT 46399 | |||||||| || || ||||| ||||| ||||| || ||||||||||| || |||| Sbjct 119053644 TCTGGTATTCTCCAACTTTCTTCTCAAAAAAGTTAGTCTTTCCTTCCAATGAGATGTTTT 119053585 Query 46400 CCATAAAATCAAACGGATTAGTAACATTATAAA 46432 |||| || ||||| ||||| || | ||| ||| Sbjct 119053584 CCATGAAGTCAAATGGATTTGTGGCCTTAAAAA 119053552 >seq9 Length=159361991 Score = 96.9 bits (106), Expect = 5e-15 Identities = 79/96 (82%), Gaps = 0/96 (0%) Strand=Plus/Minus Query 47127 TACTTCTTCAGCTGTCCAGAATGACGCCTCTGCTTTTTTATACATATTCCATATATCACG 47186 ||| |||||||| ||||||||||| || |||||||| || ||||| | ||| || ||| | Sbjct 138025045 TACCTCTTCAGCAGTCCAGAATGAAGCTTCTGCTTTCTTGTACATTTGCCAGATGTCATG 138024986 Query 47187 ATATTGGATCGGAAAAATAACAAATCTATTTGGATT 47222 ||| ||||| || || || |||||||||| |||||| Sbjct 138024985 ATACTGGATGGGGAAGATCACAAATCTATGTGGATT 138024950 Score = 95.1 bits (104), Expect = 2e-14 Identities = 106/141 (75%), Gaps = 3/141 (2%) Strand=Plus/Minus Query 46283 TTTAAAAGTCGACATCTAAAGAAAAATGATTATCTTCTTG---TGACATAACTCCCATTT 46339 |||||||||| | || | | ||| ||||||| | | |||||| || ||||| | Sbjct 138029415 TTTAAAAGTCAGCGTCCAGTGTGAAAGTGTTATCTTTTGGCTTTGACATGACACCCATCT 138029356 Query 46340 TTTGGTATTCACCTACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTTT 46399 | ||||||||||| || | ||||| || || ||||| || |||||||| || || |||| Sbjct 138029355 TCTGGTATTCACCAACTCTCTTCTCAAAGAAGTTAGTCTTTCCTTCCAAAGAGATGTTTT 138029296 Query 46400 CCATAAAATCAAACGGATTAG 46420 |||| || ||||| ||||||| Sbjct 138029295 CCATGAAGTCAAATGGATTAG 138029275 >seq17 Length=117834370 Score = 87.8 bits (96), Expect = 3e-12 Identities = 92/121 (76%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 170098 TATGAGCCAGGAAAACGTAGATGGCTTAAAATAAAGAGAGACTACTTGAATGAGGGTTCG 170157 ||||||||||||||||| ||||| ||| | |||| || ||||| ||||| ||| | Sbjct 23108675 TATGAGCCAGGAAAACGCCATTGGCTCAAAGTCAAGAAGGATTACTTAAATGAAGGTGCA 23108616 Query 170158 ATGGCGGATTCTGCAGATTTAGTAGTATTGGGGGCATATTATGGAAAAGGAACAAAGGGT 170217 ||||| || | || || | | ||| ||||| || ||||||||||| ||| |||| ||| Sbjct 23108615 ATGGCAGACACAGCTGACCTGGCAGTTTTGGGCGCTTATTATGGAAAGGGAGCAAATGGT 23108556 Query 170218 G 170218 | Sbjct 23108555 G 23108555 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 711971644474560