Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xenopus_20laevis_20[refseq_20GCF_5F001663975.1_202016-08-09] 108,033 sequences; 2,718,433,805 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq4 125 2e-23 seq3 123 6e-23 seq2 113 1e-19 seq1 109 1e-18 >seq4 Length=159726490 Score = 125 bits (138), Expect = 2e-23 Identities = 158/216 (73%), Gaps = 6/216 (3%) Strand=Plus/Minus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || |||||||| || || || ||||| ||||| ||||| || | | || | ||||||| Sbjct 6847679 AGCACAAGATGCAGGGTTGATTCTTTCTGGATATTGTAGTCTGAAAGGGTGCGCCCATCT 6847620 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || || ||||| ||||| | |||||||||||| | | ||| ||||| || ||| Sbjct 6847619 TCCAGCTGCTTGCCGGCAAAGATCAACCTCTGCTGGTCTGGAGGGATACCTTCTTTGTCT 6847560 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCAAGAGTAATA 152069 || || ||| ||||||| |||| | |||| ||| |||||| || || ||||| Sbjct 6847559 TGGATCTTTGCTTTGACATTCTCAATAGTGTC---ACTTGGCTCTACCTCTAGGGTAATG 6847503 Query 152070 GTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATT 152105 || ||||| || || || || || |||| ||||||| Sbjct 6847502 GTCTTGCCAGTCAGGGTTTTGACAAAGATCTGCATT 6847467 >seq3 Length=181146889 Score = 123 bits (136), Expect = 6e-23 Identities = 157/215 (73%), Gaps = 6/215 (3%) Strand=Plus/Plus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || ||||||||||| || || || || ||||| |||||||| | || | ||||||| Sbjct 29378924 AGCACAAGATGAAGGGTGGATTCCTTCTGGATATTGTAATCACAGAGGGTGCGCCCATCT 29378983 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || || ||||| ||||| | |||||||||||| | | || ||||| || ||| Sbjct 29378984 TCCAGCTGCTTGCCGGCAAAGATCAACCTCTGCTGGTCTGGAGGAATGCCTTCTTTGTCT 29379043 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCAAGAGTAATA 152069 || || ||| ||||||| |||| | |||| ||| |||||| || || ||||| Sbjct 29379044 TGGATCTTTGCTTTGACATTCTCAATAGTGTC---ACTTGGCTCTACCTCCAGGGTAATG 29379100 Query 152070 GTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || ||||| || || || ||||| |||| |||||| Sbjct 29379101 GTCTTGCCAGTCAGGGTTTTCACAAAGATCTGCAT 29379135 Score = 102 bits (112), Expect = 2e-16 Identities = 145/203 (71%), Gaps = 6/203 (3%) Strand=Plus/Plus Query 151905 AGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCTTTTC 151964 || ||||||||||| ||||| ||||| || | || | |||||||| || || Sbjct 29378480 AGGGTAGACTCTTTCTGGATATTGTAGTCACAAAGGGTGCGACCATCTTCCAGCTGCTTG 29378539 Query 151965 CCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGT 152024 ||||| ||||| | ||| || ||||| | | || ||||| || |||||||| ||| | Sbjct 29378540 CCGGCAAAGATCAACCTTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATCTTTGAT 29378599 Query 152025 TTGACAGTCTCTACGCTGTC---TGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTG 152081 || ||| | |||| | |||| ||| |||||| || || ||||| || ||||| || Sbjct 29378600 TTCACATTTTCTATGGTGTCACTTGA---CTCTACCTCCAGGGTAATGGTCTTGCCAGTC 29378656 Query 152082 AGAGTCTTCACGAAGACCTGCAT 152104 | ||| || || |||| |||||| Sbjct 29378657 AAAGTTTTTACAAAGATCTGCAT 29378679 >seq2 Length=179946965 Score = 113 bits (124), Expect = 1e-19 Identities = 160/224 (71%), Gaps = 6/224 (3%) Strand=Plus/Minus Query 151884 CTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTT 151943 ||||| | ||||| | || |||||||| || || || || ||||| || | || ||| Sbjct 133019671 CTGAGACGAAGGACCAAGTGCAGAGTAGATTCCTTCTGTATATTGTAGTCAGATAGTGTT 133019612 Query 151944 CTCCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCT 152003 ||||||||||| || || || || ||||| | || || ||||| | | || ||| Sbjct 133019611 CTCCCATCTTCCAGCTGCTTACCAGCAAAGATCAATCTTTGTTGGTCAGGGGGAATGCCT 133019552 Query 152004 TCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCA 152060 ||||| ||||| ||||| ||||||| |||| | | || ||| |||||| ||| Sbjct 133019551 TCCTTGTCTTGGATTTTGGCTTTGACATTCTCAATAGTATC---ACTTGGCTCTACCTCA 133019495 Query 152061 AGAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 |||||||| || || || || || || ||||| || | |||||| Sbjct 133019494 AGAGTAATTGTCTTCCCTGTCAGTGTTTTCACAAATATCTGCAT 133019451 Score = 105 bits (116), Expect = 2e-17 Identities = 153/215 (71%), Gaps = 6/215 (3%) Strand=Plus/Minus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 ||||| || || || || || ||||| || |||||||| || | | ||| | |||||| Sbjct 133020574 AGGACCAGGTGGAGGGTGGATTCTTTCTGTATGTTGTAGTCAGAGAGAGTGCGACCATCT 133020515 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || || || || ||||| | ||||| ||||| | | |||||||||||| || Sbjct 133020514 TCCAGCTGCTTGCCAGCAAAGATCAATCTCTGTTGGTCAGGAGGGATTCCTTCCTTATCC 133020455 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCAAGAGTAATA 152069 || |||||| || ||| |||| | |||| ||| ||| |||||||| ||||| Sbjct 133020454 TGGATTTTTGCCTTTACATTCTCAATTGTGTC---ACTGGGCTCAACTTCAAGGGTAATG 133020398 Query 152070 GTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || || || | |||||||| || | |||||| Sbjct 133020397 GTCTTCCCAGTTAAGGTCTTCACAAATATCTGCAT 133020363 Score = 104 bits (114), Expect = 5e-17 Identities = 158/224 (71%), Gaps = 6/224 (3%) Strand=Plus/Minus Query 151884 CTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTT 151943 || || | ||| || | ||| || || || ||||| || || ||||| || | || ||| Sbjct 133019899 CTCAGACGGAGAACCAAATGCAGGGTTGATTCTTTCTGTATATTGTAGTCAGATAGTGTT 133019840 Query 151944 CTCCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCT 152003 ||||||||||| || || || || ||||| | || || ||||| | | || ||| Sbjct 133019839 CTCCCATCTTCCAGCTGCTTACCAGCAAAGATCAATCTTTGTTGGTCAGGGGGAATGCCT 133019780 Query 152004 TCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCA 152060 ||||| ||||| ||||| |||||| |||| | | || ||| |||||| ||| Sbjct 133019779 TCCTTGTCTTGGATTTTGGCCTTGACATTCTCAATAGTATC---ACTTGGCTCTACCTCA 133019723 Query 152061 AGAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 |||||||| || || || || || || ||||| || | |||||| Sbjct 133019722 AGAGTAATTGTCTTCCCTGTCAGTGTTTTCACAAATATCTGCAT 133019679 Score = 87.8 bits (96), Expect = 4e-12 Identities = 145/208 (70%), Gaps = 1/208 (0%) Strand=Plus/Minus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||| || ||||| || || || || || |||||||| | | ||||| |||||||| | Sbjct 133019429 CAAG-TGCAGAGTGGATTCCTTCTGAATATTGTAATCAGACAGGGTTCTGCCATCTTCCA 133019371 Query 151957 GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016 ||| || || ||||| | || || || || | | || |||||||| ||||| | Sbjct 133019370 ATTGTTTGCCAGCAAAGATCAATCTTTGTTGATCAGGGGGAATGCCTTCCTTGTCTTGGA 133019311 Query 152017 TTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGC 152076 |||| |||||| |||| | | || | ||| || ||||||||||| || || | Sbjct 133019310 TTTTGGCCTTGACATTCTCAATAGTATCGCTAGGCTCAACCTCAAGAGTAATTGTCTTCC 133019251 Query 152077 CCGTGAGAGTCTTCACGAAGACCTGCAT 152104 | || | |||||||| || | |||||| Sbjct 133019250 CTGTCAAGGTCTTCACAAATATCTGCAT 133019223 >seq1 Length=219802468 Score = 109 bits (120), Expect = 1e-18 Identities = 154/214 (72%), Gaps = 7/214 (3%) Strand=Plus/Minus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||| || ||||| || || ||||| ||||||||||| | | |||| ||||| || | Sbjct 160683827 CAAG-TGCAGAGTGGATTCCTTTTGAATGTTGTAATCTGACAGGGTTCGTCCATCCTCCA 160683769 Query 151957 GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016 | ||| || |||||||| | ||| || ||||| | | || ||||| || ||||| | Sbjct 160683768 GCTGTTTGCCAGCGAAGATCAACCTTTGTTGGTCAGGGGGAATGCCTTCTTTATCTTGGA 160683709 Query 152017 TTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCAAGAGTAATAGTTT 152073 |||| ||| ||| |||| | |||| ||| ||| |||||||| || || || | Sbjct 160683708 TTTTAGCTTTCACATTCTCAATTGTGTC---ACTTGGCTCAACTTCAAGTGTGATGGTCT 160683652 Query 152074 TGCCCGTGAGAGTCTTCACGAAGACCTGCATTTT 152107 | || |||||||| ||||| || | |||||| || Sbjct 160683651 TCCCAGTGAGAGTTTTCACAAATATCTGCATGTT 160683618 Score = 100 bits (110), Expect = 7e-16 Identities = 143/200 (72%), Gaps = 6/200 (3%) Strand=Plus/Minus Query 151908 GTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCTTTTCCCG 151967 || |||||||| || |||||||| || | | ||||| |||||||| || || || Sbjct 160684045 GTGGACTCTTTCTGAATGTTGTAGTCTGACAGGGTTCTGCCATCTTCCAGCTGCTTACCA 160683986 Query 151968 GCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGTTTG 152027 || || || | ||||||||||| | | || ||||| || ||||| |||||| || Sbjct 160683985 GCAAAAATCAATCTCTGCTGGTCAGGGGGAATACCTTCTTTGTCTTGGATTTTTGCCTTT 160683926 Query 152028 ACAGTCTCTACGCTGTCTGAACT---CTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGA 152084 ||| |||| | |||| ||| ||| || ||||||||||| || || || || || Sbjct 160683925 ACATTCTCAATAGTGTC---ACTTGGCTCCACCTCAAGAGTAATTGTCTTCCCTGTCAGG 160683869 Query 152085 GTCTTCACGAAGACCTGCAT 152104 |||||||| || | |||||| Sbjct 160683868 GTCTTCACAAATATCTGCAT 160683849 Score = 98.7 bits (108), Expect = 2e-15 Identities = 157/224 (70%), Gaps = 6/224 (3%) Strand=Plus/Minus Query 151884 CTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTT 151943 ||||| | ||||| | ||| ||||| || ||||| || || ||||| || | | ||| Sbjct 160684753 CTGAGACGAAGGACCAAATGCAGAGTGGATTCTTTCTGAATATTGTAGTCAGAGAGAGTG 160684694 Query 151944 CTCCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCT 152003 | |||||||| || || || || ||||| | || || ||||| | | |||||| Sbjct 160684693 CGGCCATCTTCCAGCTGCTTGCCTGCAAAGATCAATCTTTGTTGGTCAGGAGGAATTCCT 160684634 Query 152004 TCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCA 152060 ||||| || || ||||| |||||| |||| | |||| ||| ||| |||||| Sbjct 160684633 TCCTTATCCTGGATTTTAGCCTTGACATTCTCAATAGTGTC---ACTTGGCTCAACTTCA 160684577 Query 152061 AGAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 |||||||| || || || || | ||||| || || | |||||| Sbjct 160684576 AGAGTAATGGTCTTCCCAGTTAAGGTCTTGACAAATATCTGCAT 160684533 Score = 96.9 bits (106), Expect = 8e-15 Identities = 142/200 (71%), Gaps = 6/200 (3%) Strand=Plus/Minus Query 151908 GTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCTTTTCCCG 151967 || ||||||||||| ||||||||||| | | ||| | |||||||| || ||||| Sbjct 160685185 GTGGACTCTTTTTGAATGTTGTAATCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTCCCA 160685126 Query 151968 GCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGTTTG 152027 || || || | ||||| || || | | || ||||| || ||||| |||||| || Sbjct 160685125 GCAAAAATCAATCTCTGTTGATCAGGGGGAATGCCTTCTTTGTCTTGGATTTTTGCCTTA 160685066 Query 152028 ACAGTCTCTACGCTGTCTGAACT---CTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGA 152084 ||| |||| | | |||| ||| || ||||| |||||||| || || || || || Sbjct 160685065 ACATTCTCAATGGTGTC---ACTTGGTTCAACTTCTAGAGTAATTGTCTTCCCGGTCAGT 160685009 Query 152085 GTCTTCACGAAGACCTGCAT 152104 || ||||| || | |||||| Sbjct 160685008 GTTTTCACAAATATCTGCAT 160684989 Score = 96.9 bits (106), Expect = 8e-15 Identities = 151/215 (70%), Gaps = 6/215 (3%) Strand=Plus/Minus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 ||||| || || || || || ||||| || |||||||| || | | ||| | |||||| Sbjct 160685428 AGGACCAGGTGGAGGGTGGATTCTTTCTGAATGTTGTAGTCAGAGAGAGTGCGGCCATCT 160685369 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || || || || || || | ||||||||||| | | || |||||||| || Sbjct 160685368 TCCAGCTGCTTGCCAGCAAATATCAATCTCTGCTGGTCAGGGGGAATGCCTTCCTTATCC 160685309 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTC---TCTACTTCAAGAGTAATA 152069 || |||||| || ||| |||| | | |||| ||| || |||||||||||||| Sbjct 160685308 TGGATTTTTGCCTTTACATTCTCAATGGTGTC---ACTTGGTTCAACTTCAAGAGTAATG 160685252 Query 152070 GTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || || || | ||||| || || | |||||| Sbjct 160685251 GTCTTCCCAGTTAAGGTCTTGACAAATATCTGCAT 160685217 Score = 89.7 bits (98), Expect = 1e-12 Identities = 155/224 (69%), Gaps = 6/224 (3%) Strand=Plus/Minus Query 151884 CTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTT 151943 ||||| | ||||| | || |||||||| || || || || || || || | | ||| Sbjct 160684297 CTGAGACGAAGGACCAAGTGCAGAGTAGATTCCTTCTGAATATTATAGTCTGACAGGGTT 160684238 Query 151944 CTCCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCT 152003 || |||||||| | ||| || || || || | ||||| || || | | || ||| Sbjct 160684237 CTTCCATCTTCCAATTGTTTGCCAGCAAATATCAATCTCTGTTGATCAGGGGGAATGCCT 160684178 Query 152004 TCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCA 152060 ||||| ||||| ||||| || ||| |||| | |||| ||| ||| |||||| Sbjct 160684177 TCCTTGTCTTGGATTTTGGCCTTTACATTCTCAATAGTGTC---ACTTGGCTCAACTTCA 160684121 Query 152061 AGAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 |||||||| || || || || || |||||||| || | ||||| Sbjct 160684120 AGAGTAATTGTCTTCCCTGTCAGGGTCTTCACAAATATTTGCAT 160684077 Score = 87.8 bits (96), Expect = 4e-12 Identities = 140/200 (70%), Gaps = 6/200 (3%) Strand=Plus/Minus Query 151908 GTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCTTTTCCCG 151967 || |||||||| || || ||||| || | | ||||| ||||||||||| || || Sbjct 160684957 GTTGACTCTTTCTGAATATTGTAGTCAGACAGGGTTCTGCCATCTTCTAGTTGCTTACCA 160684898 Query 151968 GCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGTTTG 152027 || || || | ||||||||||| | | || ||||| || ||||| |||||| ||| Sbjct 160684897 GCAAAAATCAATCTCTGCTGGTCAGGGGGAATGCCTTCTTTGTCTTGGATTTTTGCTTTT 160684838 Query 152028 ACAGTCTCTACGCTGTCTGAACT---CTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGA 152084 || | || | |||| ||| || |||||||||||||| ||||| || || | Sbjct 160684837 ACGTTTTCAATTGTGTC---ACTTGGTTCAACTTCAAGAGTAATTGTTTTACCAGTTAAG 160684781 Query 152085 GTCTTCACGAAGACCTGCAT 152104 ||||| || || | ||||| Sbjct 160684780 GTCTTGACAAATATTTGCAT 160684761 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1152223712618143