Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xenopus_20laevis_20[refseq_20GCF_5F001663975.1_202016-08-09] 108,033 sequences; 2,718,433,805 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq3 138 8e-28 seq4 111 1e-19 seq2 98.7 7e-16 seq1 95.1 9e-15 seq63962 93.3 3e-14 seq9 84.2 2e-11 seq12 82.4 5e-11 >seq3 Length=181146889 Score = 138 bits (152), Expect = 8e-28 Identities = 173/235 (74%), Gaps = 2/235 (1%) Strand=Plus/Plus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || || ||||| | | ||| || ||||| ||| ||||| ||||| |||||||| Sbjct 29378905 CATACCACCCCTCAGACGAAGCACAAGATGAAGGGTGGATTCCTTCTGGATATTGTAATC 29378964 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 ||| |||| | || ||||||||||| |||||||||||||| | |||||| |||| Sbjct 29378965 ACAGAGGGTGCGCCCATCTTCCAGCTGCTTGCCGGCAAAGATCAACCTCTGCTGGTCTGG 29379024 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATT 44285 ||| | ||||| || || ||||| ||||| | ||| | || ||||| | | Sbjct 29379025 AGGAATGCCTTCTTTGTCTTGGATCTT-TGCTTTGACATTCTCAATAGTGTCACTTGGCT 29379083 Query 44286 CCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATGAT 44340 | ||||||| ||||| ||||| || || ||||| ||||| ||||| |||||||| Sbjct 29379084 CTACCTCCAGGGTAATGGTCTTGCCAGTCAGGGTTTTCACAAAGATCTGCATGAT 29379138 Score = 105 bits (116), Expect = 5e-18 Identities = 162/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || || ||||| | | ||| || || | ||| ||||| ||||| ||||| || Sbjct 29378677 CATGCCACCCCTCAGACGAAGCACAAGATGCAAGGTGGATTCCTTCTGGATATTGTAGTC 29378736 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 || ||| | || ||||||||||| |||||||||||||| | ||| || |||| Sbjct 29378737 ACAAAGCGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATCAACCTCTGTTGGTCTGG 29378796 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTC 44286 ||| | ||||| || || ||||| |||| || |||||||||| | || Sbjct 29378797 AGGAATGCCTTCTTTGTCTTGAATCTTTGATTTCACGTTTTCTATGGTGTCACTTGGCTC 29378856 Query 44287 CACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 ||||||| ||||| ||||| || || ||||| || || ||||| ||||| Sbjct 29378857 TACCTCCAGGGTAATGGTCTTGCCAGTCAGGGTTTTTACAAAGATCTGCAT 29378907 Score = 95.1 bits (104), Expect = 9e-15 Identities = 136/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 44147 TCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAG 44206 ||||| ||||| ||||| || || |||| | || ||||||||||| || |||||| Sbjct 29377066 TCCTTCTGGATATTGTAGTCACAAAGGGTGCGCCCATCTTCCAGCTGCTTGCCAGCAAAG 29377125 Query 44207 ATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTT 44266 ||||| | ||| || |||| ||| | ||||| || || ||||| |||| || Sbjct 29377126 ATCAACCTCTGTTGGTCTGGAGGAATGCCTTCTTTATCTTGAATCTTTGATTTCACGTTT 29377185 Query 44267 CCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACG 44326 |||||||||| | || ||||| | ||||| ||||| || || | || || ||| Sbjct 29377186 TCTATGGTGTCACTTGGCTCTACCTCTAGGGTAATGGTCTTGCCAGTCAAAGTTTTTACG 29377245 Query 44327 AAGATTTGCATG 44338 ||||| |||||| Sbjct 29377246 AAGATCTGCATG 29377257 Score = 91.5 bits (100), Expect = 1e-13 Identities = 136/193 (70%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 44146 CTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAA 44205 ||| || ||||| ||||| || || ||| | || ||||||||||| |||||||| Sbjct 29378488 CTCTTTCTGGATATTGTAGTCACAAAGGGTGCGACCATCTTCCAGCTGCTTGCCGGCAAA 29378547 Query 44206 GATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGT 44265 |||||| | || || |||| ||| | ||||| || || ||||| |||| | Sbjct 29378548 GATCAACCTTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATCTTTGATTTCACATT 29378607 Query 44266 TCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCAC 44325 | |||||||||| || || ||||||| ||||| ||||| || || | || || || Sbjct 29378608 TTCTATGGTGTCACTTGACTCTACCTCCAGGGTAATGGTCTTGCCAGTCAAAGTTTTTAC 29378667 Query 44326 GAAGATTTGCATG 44338 ||||| |||||| Sbjct 29378668 AAAGATCTGCATG 29378680 >seq4 Length=159726490 Score = 111 bits (122), Expect = 1e-19 Identities = 170/239 (71%), Gaps = 4/239 (2%) Strand=Plus/Minus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || || ||||| | | ||| || || || || || || ||||| ||||| || Sbjct 6847698 CATGCCACCCCTCAGACGAAGCACAAGATGCAGGGTTGATTCTTTCTGGATATTGTAGTC 6847639 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 | || |||| | || ||||||||||| |||||||||||||| | |||||| |||| Sbjct 6847638 TGAAAGGGTGCGCCCATCTTCCAGCTGCTTGCCGGCAAAGATCAACCTCTGCTGGTCTGG 6847579 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATT 44285 ||| | |||||| || || ||||| ||||| | ||| | || ||||| | | Sbjct 6847578 AGGGATACCTTCTTTGTCTTGGATCTT-TGCTTTGACATTCTCAATAGTGTCACTTGGCT 6847520 Query 44286 CCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATGATGTGA 44344 | ||||| | ||||| ||||| || || ||||| || || ||||| ||||| ||||| Sbjct 6847519 CTACCTCTAGGGTAATGGTCTTGCCAGTCAGGGTTTTGACAAAGATCTGCAT--TGTGA 6847463 >seq2 Length=179946965 Score = 98.7 bits (108), Expect = 7e-16 Identities = 162/231 (70%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 44108 ATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCG 44167 || || || |||| | || |||||||| || ||| || || || |||||||| || Sbjct 133020592 ATCCCACCCCTCAAACGCAGGACCAGGTGGAGGGTGGATTCTTTCTGTATGTTGTAGTCA 133020533 Query 44168 GCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAA 44227 | ||| ||| | || ||||||||||| || ||||||||||| | ||| || || | | Sbjct 133020532 GAGAGAGTGCGACCATCTTCCAGCTGCTTGCCAGCAAAGATCAATCTCTGTTGGTCAGGA 133020473 Query 44228 GGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATTC 44286 || | |||||||| ||| || || ||| | | ||| | || ||||| || || Sbjct 133020472 GGGATTCCTTCCTTATCCTGGAT-TTTTGCCTTTACATTCTCAATTGTGTCACTGGGCTC 133020414 Query 44287 CACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || || | ||||| ||||| || || | ||||||||| || || ||||| Sbjct 133020413 AACTTCAAGGGTAATGGTCTTCCCAGTTAAGGTCTTCACAAATATCTGCAT 133020363 >seq1 Length=219802468 Score = 95.1 bits (104), Expect = 9e-15 Identities = 161/231 (70%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 44108 ATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCG 44167 || || || |||| | || |||||||| || ||| || || || |||||||| || Sbjct 160685446 ATCCCACCCCTCAAACGCAGGACCAGGTGGAGGGTGGATTCTTTCTGAATGTTGTAGTCA 160685387 Query 44168 GCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAA 44227 | ||| ||| | || ||||||||||| || ||||| ||||| | |||||| || | Sbjct 160685386 GAGAGAGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAATATCAATCTCTGCTGGTCAGGG 160685327 Query 44228 GGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATTC 44286 || | |||||||| ||| || || ||| | | ||| | |||||||| | ||| Sbjct 160685326 GGAATGCCTTCCTTATCCTGGAT-TTTTGCCTTTACATTCTCAATGGTGTCACTTGGTTC 160685268 Query 44287 CACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || || | ||||| ||||| || || | |||||| || || || ||||| Sbjct 160685267 AACTTCAAGAGTAATGGTCTTCCCAGTTAAGGTCTTGACAAATATCTGCAT 160685217 Score = 91.5 bits (100), Expect = 1e-13 Identities = 161/232 (69%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || ||||| || | | || | ||| | ||| ||| ||||| ||||||||||| Sbjct 160685219 CATCCCACCTCTGAGACGAAGAACTAAGTGCAAGGTGGACTCTTTTTGAATGTTGTAATC 160685160 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 | || ||| | || |||||||||||||| ||||| ||||| | ||| ||||| | Sbjct 160685159 AGAAAGAGTGCGGCCATCTTCCAGCTGCTTCCCAGCAAAAATCAATCTCTGTTGATCAGG 160685100 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATT 44285 || | ||||| || || || || ||| | || ||| | |||||||| | || Sbjct 160685099 GGGAATGCCTTCTTTGTCTTGGAT-TTTTGCCTTAACATTCTCAATGGTGTCACTTGGTT 160685041 Query 44286 CCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 | || || | ||||| ||||| || || || || ||||| || || ||||| Sbjct 160685040 CAACTTCTAGAGTAATTGTCTTCCCGGTCAGTGTTTTCACAAATATCTGCAT 160684989 Score = 84.2 bits (92), Expect = 2e-11 Identities = 166/240 (69%), Gaps = 7/240 (3%) Strand=Plus/Minus Query 44102 TATTT-CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTT 44160 ||||| ||| || ||||| || | | || | ||| | ||| ||| || || ||||| Sbjct 160684085 TATTTGCATCCCACCTCTGAGACGAAGAACTAAGTGCAAGGTGGACTCTTTCTGAATGTT 160684026 Query 44161 GTAATCGGCGAGTTGGCGCT--CGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGC 44218 ||| || | || || || | || ||||||||||| || ||||| ||||| | |||| Sbjct 160684025 GTAGTCTGACAG--GGTTCTGCCATCTTCCAGCTGCTTACCAGCAAAAATCAATCTCTGC 160683968 Query 44219 TGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTC 44277 || || | || | |||||| || || || || ||| | | ||| | || ||||| Sbjct 160683967 TGGTCAGGGGGAATACCTTCTTTGTCTTGGATTTT-TGCCTTTACATTCTCAATAGTGTC 160683909 Query 44278 GGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 | |||||||| | ||||| ||||| || || ||||||||||| || || ||||| Sbjct 160683908 ACTTGGCTCCACCTCAAGAGTAATTGTCTTCCCTGTCAGGGTCTTCACAAATATCTGCAT 160683849 >seq63962 Length=314 Score = 93.3 bits (102), Expect = 3e-14 Identities = 90/116 (78%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 44108 ATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCG 44167 || || |||| ||| | |||||||||||| || ||| ||| || ||||||||||| || Sbjct 192 ATGCCACCTCGCAGGCGCAACACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCT 251 Query 44168 GCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATC 44223 | ||| ||| | || |||||||| || |||||||| |||| ||||||||| || Sbjct 252 GAGAGAGTGCGGCCATCCTCCAGCTGTTTGCCGGCAAATATCAGACGCTGCTGGTC 307 >seq9 Length=159361991 Score = 84.2 bits (92), Expect = 2e-11 Identities = 72/89 (81%), Gaps = 0/89 (0%) Strand=Plus/Plus Query 44148 CCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGA 44207 |||| |||||||||||||| | ||| ||| | || |||||||||||||| ||||||| Sbjct 2073897 CCTTCTGGATGTTGTAATCAGAGAGAGTGCGGCCATCTTCCAGCTGCTTCCCAGCAAAGA 2073956 Query 44208 TCAAACGCTGCTGATCTGAAGGCACACCT 44236 |||| | ||||||||| | ||| | |||| Sbjct 2073957 TCAACCTCTGCTGATCAGGAGGGATACCT 2073985 >seq12 Length=128359586 Score = 82.4 bits (90), Expect = 5e-11 Identities = 146/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 44125 CAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTC 44184 |||||| ||||| | ||| ||| || |||||||| || || || | | || || Sbjct 101402844 CAACACTAGGTGCAATGTGGACTCTTTCTGGATGTTATAGTCATATAGAGTGTGTTCATC 101402785 Query 44185 GTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTC 44244 || ||||| || || ||||||| || || |||||| || | || | ||||||||| || Sbjct 101402784 TTCAAGCTGTTTACCAGCAAAGAGCAGACACTGCTGGTCAGGGGGAATACCTTCCTTATC 101402725 Query 44245 CGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGT 44304 | || || ||||| || | ||||| || ||||| |||| | || || || Sbjct 101402724 CTGGATTTTAGCCTTCACATTTTCAATGGTATCACTGGATTTACCCTCAAGGGTGATTGT 101402665 Query 44305 CTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || | || ||||| || || ||||||||||| Sbjct 101402664 TTTCCAAGTAAGGGTTTTTACAAAGATTTGCAT 101402632 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359516417852361