Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xenopus_20laevis_20[refseq_20GCF_5F001663975.1_202016-08-09] 108,033 sequences; 2,718,433,805 total letters Query= NC_033176.1 Length=224064 Score E Sequences producing significant alignments: (Bits) Value seq7 107 3e-18 seq8 91.5 2e-13 >seq7 Length=144084680 Score = 107 bits (118), Expect = 3e-18 Identities = 157/222 (71%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 8363 AACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGGAGCAGATGACGTTC 8422 || |||||| |||||| ||||||||||| |||||||| | || || || ||| ||| Sbjct 111936469 AAACCCACGCTTCCGCCAAAGGTGCTGGGTTTCCAGTATTCAGGAGAACATATGGGGTTT 111936410 Query 8423 GCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCAACTCGAGAATGCTCTCACCGAAGATG 8482 |||| |||||||| || ||||| ||||| |||| ||| | ||| |||| || || || Sbjct 111936409 CCCATCAGGCCTTTTAGAGAGAATGGAGCTCCCATCTCTACCATGGTCTCTCCAAAAATA 111936350 Query 8483 GCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAGCTCCACAGCCTCGACGTCT 8542 || ||| || |||| |||||| | | ||| | || || |||| || || | || Sbjct 111936349 GCTCCGGGGCGAGGCTGTTCCACAAGTAGTCCCGGATAAAGTTCCATGGCATCAATATCA 111936290 Query 8543 CCGTAAAGGGCCCTGAGTTCGGCAGCGATCTCCTTTTCTCCT 8584 ||||| || | | ||| || | || ||||| |||||| Sbjct 111936289 CCGTATAGTTTCTCAAATTCAGCTGACATTTCCTTCTCTCCT 111936248 Score = 104 bits (114), Expect = 3e-17 Identities = 164/233 (70%), Gaps = 4/233 (2%) Strand=Plus/Minus Query 9256 GTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGTTCTTGTTTCAGAACATCGCACACC 9315 || ||||| | ||||||| |||||||||||| ||| |||| || || || Sbjct 111934172 GTTTGGAAGATACGCTCGTCGTCCCATTCTGGATGCTCTCCAGCAAGAATGTCACAAACT 111934113 Query 9316 CTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATCATGAGCCCAGGTACCAGGCCAAAA 9375 | ||||| |||| | |||||| |||| |||||||| |||||||| || ||||||||| Sbjct 111934112 CGATTGTGCTCCCGTAACCAGATTGTGGAATACATCATCAGCCCAGGAACAAGGCCAAAA 111934053 Query 9376 GCCTCTTGACCGACAGCCAGACGCATGTTTTCGGGCACTTCGGGAGGATAGATC--ATGT 9433 | ||||| || ||||| | | | | ||| || || | ||| || || ||| || | Sbjct 111934052 ACTTCTTGCCCAACAGCAAACTGAAGATGTTCTGGAACATGGGGTGGGTACATCATATCT 111933993 Query 9434 GCACCTGGACGTCTTTGACCGAGGGGGGATACATTTCACCGTCAATCATCTGA 9486 | |||| || ||| || | || || |||||||| || || ||||||||| Sbjct 111933992 ACTCCTGCAC--TTTTCACTGTTGGTGGGTACATTTCCCCATCTATCATCTGA 111933942 Score = 91.5 bits (100), Expect = 2e-13 Identities = 115/158 (73%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 9650 CTTACCCCATGTCCCAGTCCTTTAGTGAAGGCCGGGCCTCGCGCCAAATCAGTCCTAAAA 9709 ||||||||||| || | | |||| |||||||| | ||| |||| ||| || | || Sbjct 111933511 CTTACCCCATGGCCTAATGCTTTGGTGAAGGCGGCTCCTTTTGCCATATCCGTTTTGAAG 111933452 Query 9710 AACTGGTGCGTGAAATGTTGGCCAAAAAAGGCAAACATTAAGTTGGTGCCCTGGGGATCG 9769 |||||||| ||||| ||||| |||| || |||||||| | |||||||| || || || Sbjct 111933451 AACTGGTGTGTGAAGTGTTGCGCAAAGAAAGCAAACATCACATTGGTGCCTTGAGGGTCA 111933392 Query 9770 GGAGTGAAGGTCCTCCGAAGAAGAGTTTTTTCCACAAC 9807 ||| | || | || || | || ||||||||| || Sbjct 111933391 GGAATAAATTTTCTTCGCATCAGGAATTTTTCCACCAC 111933354 >seq8 Length=121245977 Score = 91.5 bits (100), Expect = 2e-13 Identities = 94/123 (76%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 9650 CTTACCCCATGTCCCAGTCCTTTAGTGAAGGCCGGGCCTCGCGCCAAATCAGTCCTAAAA 9709 ||||||||||| || | | |||| |||||||| | ||| |||| ||| || | || Sbjct 92242915 CTTACCCCATGGCCTAATGCTTTGGTGAAGGCAGCCCCTTTTGCCATATCCGTTTTGAAG 92242856 Query 9710 AACTGGTGCGTGAAATGTTGGCCAAAAAAGGCAAACATTAAGTTGGTGCCCTGGGGATCG 9769 |||||||| ||||| ||||| |||| || |||||||| | ||||||||| || || || Sbjct 92242855 AACTGGTGTGTGAAGTGTTGAGCAAAGAAAGCAAACATAACGTTGGTGCCTTGAGGGTCA 92242796 Query 9770 GGA 9772 ||| Sbjct 92242795 GGA 92242793 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 715908720608320