Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xenopus_20laevis_20[refseq_20GCF_5F001663975.1_202016-08-09] 108,033 sequences; 2,718,433,805 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq4 150 4e-31 seq3 131 4e-25 seq1 122 2e-22 seq2 118 3e-21 >seq4 Length=159726490 Score = 150 bits (166), Expect = 4e-31 Identities = 168/222 (76%), Gaps = 7/222 (3%) Strand=Plus/Plus Query 177910 AGGTTAAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGG 177969 |||| | ||||| | || || || ||||| || || || || || || ||||| |||| Sbjct 6847460 AGGTCACAATGC---AGATCTTTGTCAAAACCCTGACTGGCAAGACCATTACCCTAGAGG 6847516 Query 177970 TGGAAAGCTCAG--ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAAT 178027 | || || || |||| || ||||| |||||| |||||| || ||||||||||| || Sbjct 6847517 TAGA--GCCAAGTGACACTATTGAGAATGTCAAAGCAAAGATCCAAGACAAAGAAGGTAT 6847574 Query 178028 CCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCT 178087 |||||| |||||||| | | ||||| ||||| || ||||| |||||||| | || || Sbjct 6847575 CCCTCCAGACCAGCAGAGGTTGATCTTTGCCGGCAAGCAGCTGGAAGATGGGCGCACCCT 6847634 Query 178088 TGCCGATTATAACGTCCAAAAAGAATCAACACTGCATCTTGT 178129 | | || || || |||| ||||||||||| ||||||||||| Sbjct 6847635 TTCAGACTACAATATCCAGAAAGAATCAACCCTGCATCTTGT 6847676 >seq3 Length=181146889 Score = 131 bits (144), Expect = 4e-25 Identities = 155/208 (75%), Gaps = 4/208 (2%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || || |||||||| || || || || || || ||||| ||||| || || || Sbjct 29379132 CAGATCTTTGTGAAAACCCTGACTGGCAAGACCATTACCCTGGAGGTAGA--GCCAAGTG 29379075 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 |||| || ||||| |||||| |||||| || ||||||||||| || ||||| ||||||| Sbjct 29379074 ACACTATTGAGAATGTCAAAGCAAAGATCCAAGACAAAGAAGGCATTCCTCCAGACCAGC 29379015 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | | | ||||| ||||| || ||||| |||||||| | || || ||||| || Sbjct 29379014 AGAGGTTGATCTTTGCCGGCAAGCAGCTGGAAGATGGGCGCACCCTCTGTGATTACAATA 29378955 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGT 178129 |||| || ||||| || || |||||||| Sbjct 29378954 TCCAGAAGGAATCCACCCTTCATCTTGT 29378927 Score = 127 bits (140), Expect = 5e-24 Identities = 154/208 (74%), Gaps = 4/208 (2%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || || || ||||| || || || || || || ||||| ||||| || || || Sbjct 29378904 CAGATCTTTGTAAAAACCCTGACTGGCAAGACCATTACCCTGGAGGTAGA--GCCAAGTG 29378847 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 ||||||| || ||||| ||| ||||||||| ||||||||||| || ||||| ||||| | Sbjct 29378846 ACACCATAGAAAACGTGAAATCAAAGATTCAAGACAAAGAAGGCATTCCTCCAGACCAAC 29378787 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | | | ||||| ||||| || ||||| |||||||| | || ||| || || || Sbjct 29378786 AGAGGTTGATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACGCTTTGTGACTACAATA 29378727 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGT 178129 |||| || ||||| || |||||||||| Sbjct 29378726 TCCAGAAGGAATCCACCTTGCATCTTGT 29378699 Score = 114 bits (126), Expect = 3e-20 Identities = 146/200 (73%), Gaps = 6/200 (3%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCA--- 177980 || || || || |||||| | || || || || || ||||| ||||| || ||| Sbjct 29378676 CAGATCTTTGTAAAAACTTTGACTGGCAAGACCATTACCCTGGAGGTAGAG---TCAAGT 29378620 Query 177981 GACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAG 178040 |||||||| || || || ||| ||||||||| ||||||||||| || ||||| ||||| Sbjct 29378619 GACACCATAGAAAATGTGAAATCAAAGATTCAAGACAAAGAAGGCATTCCTCCAGACCAA 29378560 Query 178041 CAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAAC 178100 ||| | | ||||| ||||| || ||||| |||||||| | || ||| || || || Sbjct 29378559 CAAAGGTTGATCTTTGCCGGCAAGCAGCTGGAAGATGGTCGCACCCTTTGTGACTACAAT 29378500 Query 178101 GTCCAAAAAGAATCAACACT 178120 |||| ||||| || || || Sbjct 29378499 ATCCAGAAAGAGTCTACCCT 29378480 >seq1 Length=219802468 Score = 122 bits (134), Expect = 2e-22 Identities = 155/210 (74%), Gaps = 5/210 (2%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCA--G 177981 || || || |||||||||||||| || || || ||||| || || || | ||| | | Sbjct 160683624 CAGATATTTGTGAAAACTCTCACTGGGAAGACCATCACACTTGAAGTTG--AGCCAAGTG 160683681 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 |||| || ||||| || ||| || || || || |||||||| || || || ||||| | Sbjct 160683682 ACACAATTGAGAATGTGAAAGCTAAAATCCAAGATAAAGAAGGCATTCCCCCTGACCAAC 160683741 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 || | | |||||||| || |||||||| || |||||| | || || | ||||| ||| Sbjct 160683742 AAAGGTTGATCTTCGCTGGCAAACAGCTGGAGGATGGACGAACCCTGTCAGATTACAACA 160683801 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGTTT 178131 | ||||| ||||| || ||||| |||| || Sbjct 160683802 TTCAAAAGGAATCCACTCTGCA-CTTGGTT 160683830 Score = 107 bits (118), Expect = 5e-18 Identities = 155/219 (71%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || |||||||| || || || || || || || || || || ||| ||| Sbjct 160684992 CAGATATTTGTGAAAACACTGACCGGGAAGACAATTACTCTAGAAGTTGAACCAAGTGAC 160685051 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| ||||| || || ||| || || ||||||||||| || || || || || || Sbjct 160685052 ACCATTGAGAATGTTAAGGCAAAAATCCAAGACAAAGAAGGCATTCCCCCTGATCAACAG 160685111 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | || || || || || ||||| |||||||| | |||||| | ||||| ||| | Sbjct 160685112 AGATTGATTTTTGCTGGGAAGCAGCTGGAAGATGGCCGCACTCTTTCTGATTACAACATT 160685171 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 |||||||| || || |||| | ||| | | |||||| Sbjct 160685172 CAAAAAGAGTCCACCTTGCACTTAGTTCTTCGTCTCAGA 160685210 Score = 105 bits (116), Expect = 2e-17 Identities = 157/221 (71%), Gaps = 4/221 (2%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || || ||||| || || ||||| || || || || || |||||||| || || Sbjct 160683852 CAGATATTTGTGAAGACCCTGACAGGGAAGACAATTACTCTTGAGGTGGA--GCCAAGTG 160683909 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 |||| || ||||| || || ||| || || ||||||||||| || || || ||||||| Sbjct 160683910 ACACTATTGAGAATGTAAAGGCAAAAATCCAAGACAAAGAAGGTATTCCCCCTGACCAGC 160683969 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | || | || || || || || ||||| |||||||| || || || | || || ||| Sbjct 160683970 AGAGATTGATTTTTGCTGGTAAGCAGCTGGAAGATGGCAGAACCCTGTCAGACTACAACA 160684029 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 | || ||||| || || |||| | ||| | | |||||| Sbjct 160684030 TTCAGAAAGAGTCCACCTTGCACTTAGTTCTTCGTCTCAGA 160684070 Score = 102 bits (112), Expect = 2e-16 Identities = 154/219 (70%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || || || || | || || || || || ||||| || || ||| ||| Sbjct 160684308 CAGATATTTGTCAAGACCTTAACTGGGAAGACCATTACCCTTGAAGTTGAACCAAGTGAC 160684367 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || || || ||| ||| || || ||||||||||| || ||||| || ||||| Sbjct 160684368 ACAATTGAAAATGTAAAAGCAAAAATCCAAGACAAAGAAGGCATTCCTCCTGATCAGCAG 160684427 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | || || || || || ||||| |||||||| | |||||| | || || ||| | Sbjct 160684428 AGATTGATTTTTGCTGGTAAGCAGCTGGAAGATGGCCGCACTCTTTCTGACTACAACATT 160684487 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 ||||||||||| || |||| | ||| | | |||||| Sbjct 160684488 CAAAAAGAATCCACCTTGCACTTAGTTCTTCGTCTCAGA 160684526 Score = 91.5 bits (100), Expect = 4e-13 Identities = 140/200 (70%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| || || || || | || || ||||| || || || || || ||| ||| Sbjct 160684764 CAAATATTTGTCAAGACCTTAACTGGTAAAACAATTACTCTTGAAGTTGAACCAAGTGAC 160684823 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || ||||| ||| ||| || || ||||||||||| || || || |||||||| Sbjct 160684824 ACAATTGAAAACGTAAAAGCAAAAATCCAAGACAAAGAAGGCATTCCCCCTGACCAGCAG 160684883 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | || || || || || || || |||||||| || || || | || || || | Sbjct 160684884 AGATTGATTTTTGCTGGTAAGCAACTAGAAGATGGCAGAACCCTGTCTGACTACAATATT 160684943 Query 178104 CAAAAAGAATCAACACTGCA 178123 || ||||| ||||| |||| Sbjct 160684944 CAGAAAGAGTCAACCTTGCA 160684963 Score = 86.0 bits (94), Expect = 2e-11 Identities = 145/207 (70%), Gaps = 5/207 (2%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 ||||| || ||||| || || ||||| || || || || || || || || || || Sbjct 160684080 CAAATATTTGTGAAGACCCTGACAGGGAAGACAATTACTCTTGAAGTTGA--GCCAAGTG 160684137 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 |||| || ||||| || || || || || ||||| ||||| || || || || || | Sbjct 160684138 ACACTATTGAGAATGTAAAGGCCAAAATCCAAGACAAGGAAGGCATTCCCCCTGATCAAC 160684197 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | || | || || || || ||||| | ||||||||||| || || | || ||||| Sbjct 160684198 AGAGATTGATATTTGCTGGCAAACAATTGGAAGATGGAAGAACCCTGTCAGACTATAATA 160684257 Query 178102 TCCAAAAAGAATCAACACTGCATCTTG 178128 | || || ||||| || ||||| |||| Sbjct 160684258 TTCAGAAGGAATCTACTCTGCA-CTTG 160684283 >seq2 Length=179946965 Score = 118 bits (130), Expect = 3e-21 Identities = 154/210 (73%), Gaps = 5/210 (2%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCA--G 177981 || || || |||||||||||||| || || || ||||| || || || | ||| | | Sbjct 133018998 CAGATATTTGTGAAAACTCTCACTGGGAAGACCATCACACTAGAAGTTG--AGCCAAGTG 133019055 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 | || || ||||| || || || |||||||| |||||||| || ||||| ||||| | Sbjct 133019056 ATACTATTGAGAATGTGAAGGCTAAAATTCAGGATAAAGAAGGCATTCCTCCAGACCAAC 133019115 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 || | | || || || || |||||||| |||||||| | || || | || |||||| Sbjct 133019116 AAAGGTTGATTTTTGCTGGCAAACAGCTGGAAGATGGTCGAACCCTGTCAGACTATAACA 133019175 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGTTT 178131 | ||||| ||||| || ||||| |||| || Sbjct 133019176 TTCAAAAGGAATCCACTCTGCA-CTTGGTT 133019204 Score = 111 bits (122), Expect = 4e-19 Identities = 151/209 (72%), Gaps = 4/209 (2%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || || |||||||| || ||||| || || || || || ||||| || || || Sbjct 133019682 CAGATATTTGTGAAAACACTGACAGGGAAGACAATTACTCTTGAGGTAGA--GCCAAGTG 133019739 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 | || || ||||| ||||| || || || ||||| ||||| || || || ||||| | Sbjct 133019740 ATACTATTGAGAATGTCAAGGCCAAAATCCAAGACAAGGAAGGCATTCCCCCTGACCAAC 133019799 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 || || | ||||| || || || ||||| |||||||| || || || | || || || Sbjct 133019800 AAAGATTGATCTTTGCTGGTAAGCAGCTGGAAGATGGGAGAACACTATCTGACTACAATA 133019859 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGTT 178130 | || ||||||||||| |||||| | ||| Sbjct 133019860 TACAGAAAGAATCAACCCTGCATTTGGTT 133019888 Score = 109 bits (120), Expect = 1e-18 Identities = 150/208 (72%), Gaps = 4/208 (2%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || || ||||| || | || || || || || ||||| || || || || ||| Sbjct 133020366 CAGATATTTGTGAAGACCTTAACTGGGAAGACCATTACCCTTGAAGTTGA--GCCCAGTG 133020423 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 |||| || ||||| || || ||| || ||||| || |||||||||||||| ||||| | Sbjct 133020424 ACACAATTGAGAATGTAAAGGCAAAAATCCAGGATAAGGAAGGAATCCCTCCTGACCAAC 133020483 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | || | ||||| || || || ||||| |||||||| | ||||| | || || ||| Sbjct 133020484 AGAGATTGATCTTTGCTGGCAAGCAGCTGGAAGATGGTCGCACTCTCTCTGACTACAACA 133020543 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGT 178129 | || |||||||| || || || || || Sbjct 133020544 TACAGAAAGAATCCACCCTCCACCTGGT 133020571 Score = 87.8 bits (96), Expect = 4e-12 Identities = 143/205 (70%), Gaps = 1/205 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| || || || || | || || || || || ||||| ||||| ||| ||| Sbjct 133020138 CAAATATTTGTCAAGACATTAACTGGGAAGACAATTACCCTTGAGGTTGAACCAAGTGAC 133020197 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || || || ||| || || || ||||||||||| || || || |||||||| Sbjct 133020198 ACAATTGAAAATGTAAAAGCCAAAATCCAAGACAAAGAAGGCATTCCCCCTGACCAGCAG 133020257 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | || || || || || || || |||||||| || || || | || || || | Sbjct 133020258 AGATTAATTTTTGCTGGTAAGCAACTGGAAGATGGCAGAACACTGTCTGACTACAATATT 133020317 Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128 || || ||||| || ||||| |||| Sbjct 133020318 CAGAAGGAATCCACTCTGCA-CTTG 133020341 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1202065027999402