Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Xenopus_20laevis_20[refseq_20GCF_5F001663975.1_202016-08-09]
108,033 sequences; 2,718,433,805 total letters
Query= NC_033780.1
Length=144510
Score E
Sequences producing significant alignments: (Bits) Value
seq3 114 1e-20
seq1 102 8e-17
seq4 100 3e-16
seq2 93.3 4e-14
>seq3
Length=181146889
Score = 114 bits (126), Expect = 1e-20
Identities = 159/220 (72%), Gaps = 2/220 (1%)
Strand=Plus/Plus
Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704
||||| | ||| ||||| || ||| |||||||| || || || || |||||||||||
Sbjct 29378918 AGACGAAGCACAAGATGAAGGGTGGATTCCTTCTGGATATTGTAATCACAGAGGGTGCGC 29378977
Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764
| || || |||||||||||||| || |||| | ||| ||||| | |||| || ||
Sbjct 29378978 CCATCTTCCAGCTGCTTGCCGGCAAAGATCAACCTCTGCTGGTCTGGAGGAATGCCTTCT 29379037
Query 41765 TTGTCCATGATTTTTTGCTTCAAC-GACGACACAGTGTCGCTCGACTCCACCTCCACCGT 41823
|||| | || | ||||||| || | | |||||| || | ||| ||||||| ||
Sbjct 29379038 TTGT-CTTGGATCTTTGCTTTGACATTCTCAATAGTGTCACTTGGCTCTACCTCCAGGGT 29379096
Query 41824 TATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863
|| || || || ||||| || || || || |||||||||
Sbjct 29379097 AATGGTCTTGCCAGTCAGGGTTTTCACAAAGATCTGCATG 29379136
Score = 113 bits (124), Expect = 4e-20
Identities = 158/219 (72%), Gaps = 2/219 (1%)
Strand=Plus/Plus
Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704
||||| | ||| ||||||| ||| |||||||| || || ||||| | || |||||
Sbjct 29378690 AGACGAAGCACAAGATGCAAGGTGGATTCCTTCTGGATATTGTAGTCACAAAGCGTGCGG 29378749
Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764
| || || |||||||||||||| || |||| | ||||||||| | |||| || ||
Sbjct 29378750 CCATCTTCCAGCTGCTTGCCGGCAAAGATCAACCTCTGTTGGTCTGGAGGAATGCCTTCT 29378809
Query 41765 TTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCACCTCCACCGT 41823
|||| | ||| | |||| || ||| | | ||||| || | ||| ||||||| ||
Sbjct 29378810 TTGT-CTTGAATCTTTGATTTCACGTTTTCTATGGTGTCACTTGGCTCTACCTCCAGGGT 29378868
Query 41824 TATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862
|| || || || ||||| || ||||| || ||||||||
Sbjct 29378869 AATGGTCTTGCCAGTCAGGGTTTTTACAAAGATCTGCAT 29378907
Score = 105 bits (116), Expect = 6e-18
Identities = 157/220 (71%), Gaps = 2/220 (1%)
Strand=Plus/Plus
Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704
||||| | || ||||||| ||| |||||||| || || ||||| | |||||||||
Sbjct 29377039 AGACGAAGTACAAGATGCAAGGTGGATTCCTTCTGGATATTGTAGTCACAAAGGGTGCGC 29377098
Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764
| || || ||||||||||| || || |||| | ||||||||| | |||| || || |
Sbjct 29377099 CCATCTTCCAGCTGCTTGCCAGCAAAGATCAACCTCTGTTGGTCTGGAGGAATGC-CTTC 29377157
Query 41765 TTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCACCTCCACCGT 41823
|| | ||| | |||| || ||| | | ||||| || | ||| ||||| | ||
Sbjct 29377158 TTTATCTTGAATCTTTGATTTCACGTTTTCTATGGTGTCACTTGGCTCTACCTCTAGGGT 29377217
Query 41824 TATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863
|| || || || |||| || |||||||| |||||||||
Sbjct 29377218 AATGGTCTTGCCAGTCAAAGTTTTTACGAAGATCTGCATG 29377257
Score = 95.1 bits (104), Expect = 1e-14
Identities = 139/194 (72%), Gaps = 2/194 (1%)
Strand=Plus/Plus
Query 41671 CTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 41730
||| ||||| || || ||||| | |||||||| | || || |||||||||||||| ||
Sbjct 29378488 CTCTTTCTGGATATTGTAGTCACAAAGGGTGCGACCATCTTCCAGCTGCTTGCCGGCAAA 29378547
Query 41731 TATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGA 41790
|||| | |||||||| | |||| || || |||| | ||| | |||| || ||
Sbjct 29378548 GATCAACCTTTGTTGGTCTGGAGGAATGCCTTCTTTGT-CTTGAATCTTTGATTTCACAT 29378606
Query 41791 CGAC-ACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTA 41849
| | ||||| || ||||| ||||||| || || || || || |||| || ||||
Sbjct 29378607 TTTCTATGGTGTCACTTGACTCTACCTCCAGGGTAATGGTCTTGCCAGTCAAAGTTTTTA 29378666
Query 41850 CGAAAATCTGCATG 41863
| || |||||||||
Sbjct 29378667 CAAAGATCTGCATG 29378680
>seq1
Length=219802468
Score = 102 bits (112), Expect = 8e-17
Identities = 148/209 (71%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 41654 ACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCG 41713
||||| || || ||| || ||||||||||| ||||| ||||| ||||| | || ||
Sbjct 160685425 ACCAGGTGGAGGGTGGATTCTTTCTGAATGTTGTAGTCAGAGAGAGTGCGGCCATCTTCC 160685366
Query 41714 AGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATG 41773
||||||||||| || ||||||| | ||| ||||| | ||||| || ||||| ||| |
Sbjct 160685365 AGCTGCTTGCCAGCAAATATCAATCTCTGCTGGTCAGGGGGAATGCCTTCCTTATCCTGG 160685306
Query 41774 ATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTA 41833
|||||| ||| | | | ||||| || | || || || | || || || ||
Sbjct 160685305 ATTTTTGCCTTTACATTCTCAATGGTGTCACTTGGTTCAACTTCAAGAGTAATGGTCTTC 160685246
Query 41834 CCCGTCAGCGTCTTTACGAAAATCTGCAT 41862
|| || | ||||| || || ||||||||
Sbjct 160685245 CCAGTTAAGGTCTTGACAAATATCTGCAT 160685217
Score = 100 bits (110), Expect = 3e-16
Identities = 144/203 (71%), Gaps = 0/203 (0%)
Strand=Plus/Minus
Query 41660 TGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGC 41719
|||| ||| ||| ||||||||||| ||||| || ||||| | | || || ||||||
Sbjct 160684051 TGCAAGGTGGACTCTTTCTGAATGTTGTAGTCTGACAGGGTTCTGCCATCTTCCAGCTGC 160683992
Query 41720 TTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTTT 41779
|| || || || |||| | ||| ||||| | ||||| | || ||||| |||||||
Sbjct 160683991 TTACCAGCAAAAATCAATCTCTGCTGGTCAGGGGGAATACCTTCTTTGTCTTGGATTTTT 160683932
Query 41780 TGCTTCAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACCCGTC 41839
||| | | | |||||| || | ||||||||| | || || || || || |||
Sbjct 160683931 GCCTTTACATTCTCAATAGTGTCACTTGGCTCCACCTCAAGAGTAATTGTCTTCCCTGTC 160683872
Query 41840 AGCGTCTTTACGAAAATCTGCAT 41862
|| ||||| || || ||||||||
Sbjct 160683871 AGGGTCTTCACAAATATCTGCAT 160683849
Score = 96.9 bits (106), Expect = 3e-15
Identities = 152/218 (70%), Gaps = 0/218 (0%)
Strand=Plus/Minus
Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704
||||| | |||| |||||| ||| || |||||||| || ||||| ||||| |||||
Sbjct 160684750 AGACGAAGGACCAAATGCAGAGTGGATTCTTTCTGAATATTGTAGTCAGAGAGAGTGCGG 160684691
Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764
| || || ||||||||||| || || |||| | |||||||| | |||| | |||
Sbjct 160684690 CCATCTTCCAGCTGCTTGCCTGCAAAGATCAATCTTTGTTGGTCAGGAGGAATTCCTTCC 160684631
Query 41765 TTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTT 41824
|| ||| |||||| ||| | | | |||||| || | ||| || || | ||
Sbjct 160684630 TTATCCTGGATTTTAGCCTTGACATTCTCAATAGTGTCACTTGGCTCAACTTCAAGAGTA 160684571
Query 41825 ATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862
|| || || || || | ||||| || || ||||||||
Sbjct 160684570 ATGGTCTTCCCAGTTAAGGTCTTGACAAATATCTGCAT 160684533
Score = 91.5 bits (100), Expect = 1e-13
Identities = 151/218 (69%), Gaps = 0/218 (0%)
Strand=Plus/Minus
Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704
||||| | |||| ||||| || ||||||||||| |||||||| || ||||| |
Sbjct 160684294 AGACGAAGGACCAAGTGCAGAGTAGATTCCTTCTGAATATTATAGTCTGACAGGGTTCTT 160684235
Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764
| || || | || ||||| || ||||||| | |||||| || | ||||| || |||
Sbjct 160684234 CCATCTTCCAATTGTTTGCCAGCAAATATCAATCTCTGTTGATCAGGGGGAATGCCTTCC 160684175
Query 41765 TTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTT 41824
||||| |||||| ||| | | | |||||| || | ||| || || | ||
Sbjct 160684174 TTGTCTTGGATTTTGGCCTTTACATTCTCAATAGTGTCACTTGGCTCAACTTCAAGAGTA 160684115
Query 41825 ATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862
|| || || || ||||| ||||| || || || |||||
Sbjct 160684114 ATTGTCTTCCCTGTCAGGGTCTTCACAAATATTTGCAT 160684077
Score = 86.0 bits (94), Expect = 6e-12
Identities = 146/212 (69%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 41654 ACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCG 41713
|||| ||||| ||| ||||| |||||||| || || || ||||| || | || ||
Sbjct 160683829 ACCAAGTGCAGAGTGGATTCCTTTTGAATGTTGTAATCTGACAGGGTTCGTCCATCCTCC 160683770
Query 41714 AGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATG 41773
||||| ||||| ||||| |||| | |||||||| | ||||| || || || || |
Sbjct 160683769 AGCTGTTTGCCAGCGAAGATCAACCTTTGTTGGTCAGGGGGAATGCCTTCTTTATCTTGG 160683710
Query 41774 ATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTA 41833
||||| |||| | | ||||| || | ||| || || | || || || ||
Sbjct 160683709 ATTTTAGCTTTCACATTCTCAATTGTGTCACTTGGCTCAACTTCAAGTGTGATGGTCTTC 160683650
Query 41834 CCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865
|| || || || || || || |||||||||||
Sbjct 160683649 CCAGTGAGAGTTTTCACAAATATCTGCATGTT 160683618
>seq4
Length=159726490
Score = 100 bits (110), Expect = 3e-16
Identities = 155/219 (71%), Gaps = 2/219 (1%)
Strand=Plus/Minus
Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704
||||| | ||| |||||||| || || ||||| || || ||||| || |||||||||
Sbjct 6847685 AGACGAAGCACAAGATGCAGGGTTGATTCTTTCTGGATATTGTAGTCTGAAAGGGTGCGC 6847626
Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764
| || || |||||||||||||| || |||| | ||| ||||| | || | | ||
Sbjct 6847625 CCATCTTCCAGCTGCTTGCCGGCAAAGATCAACCTCTGCTGGTCTGGAGGGATACCTTCT 6847566
Query 41765 TTGTCCATGATTTTTTGCTTCAAC-GACGACACAGTGTCGCTCGACTCCACCTCCACCGT 41823
|||| | || | ||||||| || | | |||||| || | ||| ||||| | ||
Sbjct 6847565 TTGT-CTTGGATCTTTGCTTTGACATTCTCAATAGTGTCACTTGGCTCTACCTCTAGGGT 6847507
Query 41824 TATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862
|| || || || ||||| || || || || ||||||||
Sbjct 6847506 AATGGTCTTGCCAGTCAGGGTTTTGACAAAGATCTGCAT 6847468
>seq2
Length=179946965
Score = 93.3 bits (102), Expect = 4e-14
Identities = 150/213 (70%), Gaps = 2/213 (1%)
Strand=Plus/Minus
Query 41654 ACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCG 41713
|||| ||||| ||| ||||| |||||||||||||| || ||||| || | || ||
Sbjct 133019203 ACCAAGTGCAGAGTGGATTCCTTTTGAATGTTATAGTCTGACAGGGTTCGACCATCTTCC 133019144
Query 41714 AGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATG 41773
||||| ||||| || || |||| | |||||||| | |||| || || || ||| ||
Sbjct 133019143 AGCTGTTTGCCAGCAAAAATCAACCTTTGTTGGTCTGGAGGAATGCCTTCTTTATCC-TG 133019085
Query 41774 ATTTTTTGC-TTCAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTT 41832
| |||| || |||| | | ||| || || | ||| || || | || || || ||
Sbjct 133019084 AATTTTAGCCTTCACATTCTCAATAGTATCACTTGGCTCAACTTCTAGTGTGATGGTCTT 133019025
Query 41833 ACCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865
|| || || || || || || |||||||||||
Sbjct 133019024 CCCAGTGAGAGTTTTCACAAATATCTGCATGTT 133018992
Score = 89.7 bits (98), Expect = 5e-13
Identities = 145/209 (69%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 41654 ACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCG 41713
||||| || || ||| || ||||| ||||| ||||| ||||| ||||| | || ||
Sbjct 133020571 ACCAGGTGGAGGGTGGATTCTTTCTGTATGTTGTAGTCAGAGAGAGTGCGACCATCTTCC 133020512
Query 41714 AGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATG 41773
||||||||||| || || |||| | ||||||||| | || | | ||||| ||| |
Sbjct 133020511 AGCTGCTTGCCAGCAAAGATCAATCTCTGTTGGTCAGGAGGGATTCCTTCCTTATCCTGG 133020452
Query 41774 ATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTA 41833
|||||| ||| | | | ||||| || | ||| || || | || || || ||
Sbjct 133020451 ATTTTTGCCTTTACATTCTCAATTGTGTCACTGGGCTCAACTTCAAGGGTAATGGTCTTC 133020392
Query 41834 CCCGTCAGCGTCTTTACGAAAATCTGCAT 41862
|| || | ||||| || || ||||||||
Sbjct 133020391 CCAGTTAAGGTCTTCACAAATATCTGCAT 133020363
Score = 87.8 bits (96), Expect = 2e-12
Identities = 136/192 (71%), Gaps = 2/192 (1%)
Strand=Plus/Minus
Query 41672 TCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 41731
|| ||||| ||||||||||| || ||||| || | || || || |||||||| || ||
Sbjct 133020097 TCTTTCTGGATGTTATAGTCTGACAGGGTTCGGCCATCTTCCAGTTGCTTGCCAGCAAAA 133020038
Query 41732 ATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGAC 41791
|||| | ||| ||||| | ||||| | || || ||| ||| ||||||| | |||
Sbjct 133020037 ATCAATCTCTGCTGGTCAGGGGGAATACCTTCTTTATCC-TGAATTTTTGCCTTAACATT 133019979
Query 41792 GAC-ACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTAC 41850
| | ||||| || | ||| || || | || || |||||||| || | ||||| ||
Sbjct 133019978 TTCAATTGTGTCACTTGGCTCAACTTCAAGGGTAATGGTTTTACCAGTTAAGGTCTTGAC 133019919
Query 41851 GAAAATCTGCAT 41862
|| || |||||
Sbjct 133019918 AAATATTTGCAT 133019907
Score = 82.4 bits (90), Expect = 7e-11
Identities = 144/210 (69%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 41654 ACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCG 41713
|||| ||||| ||| ||||||||||| || || || || ||||| | | || ||
Sbjct 133019431 ACCAAGTGCAGAGTGGATTCCTTCTGAATATTGTAATCAGACAGGGTTCTGCCATCTTCC 133019372
Query 41714 AGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATG 41773
| || ||||| || || |||| | ||||| || | ||||| || |||||||| |
Sbjct 133019371 AATTGTTTGCCAGCAAAGATCAATCTTTGTTGATCAGGGGGAATGCCTTCCTTGTCTTGG 133019312
Query 41774 ATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTA 41833
||||| ||| | | | ||| ||||| | ||| ||||| | || || || ||
Sbjct 133019311 ATTTTGGCCTTGACATTCTCAATAGTATCGCTAGGCTCAACCTCAAGAGTAATTGTCTTC 133019252
Query 41834 CCCGTCAGCGTCTTTACGAAAATCTGCATG 41863
|| |||| ||||| || || |||||||||
Sbjct 133019251 CCTGTCAAGGTCTTCACAAATATCTGCATG 133019222
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 461679698899600
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