Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xenopus_20laevis_20[refseq_20GCF_5F001663975.1_202016-08-09] 108,033 sequences; 2,718,433,805 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq3 114 1e-20 seq1 102 8e-17 seq4 100 3e-16 seq2 93.3 4e-14 >seq3 Length=181146889 Score = 114 bits (126), Expect = 1e-20 Identities = 159/220 (72%), Gaps = 2/220 (1%) Strand=Plus/Plus Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704 ||||| | ||| ||||| || ||| |||||||| || || || || ||||||||||| Sbjct 29378918 AGACGAAGCACAAGATGAAGGGTGGATTCCTTCTGGATATTGTAATCACAGAGGGTGCGC 29378977 Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764 | || || |||||||||||||| || |||| | ||| ||||| | |||| || || Sbjct 29378978 CCATCTTCCAGCTGCTTGCCGGCAAAGATCAACCTCTGCTGGTCTGGAGGAATGCCTTCT 29379037 Query 41765 TTGTCCATGATTTTTTGCTTCAAC-GACGACACAGTGTCGCTCGACTCCACCTCCACCGT 41823 |||| | || | ||||||| || | | |||||| || | ||| ||||||| || Sbjct 29379038 TTGT-CTTGGATCTTTGCTTTGACATTCTCAATAGTGTCACTTGGCTCTACCTCCAGGGT 29379096 Query 41824 TATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 || || || || ||||| || || || || ||||||||| Sbjct 29379097 AATGGTCTTGCCAGTCAGGGTTTTCACAAAGATCTGCATG 29379136 Score = 113 bits (124), Expect = 4e-20 Identities = 158/219 (72%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704 ||||| | ||| ||||||| ||| |||||||| || || ||||| | || ||||| Sbjct 29378690 AGACGAAGCACAAGATGCAAGGTGGATTCCTTCTGGATATTGTAGTCACAAAGCGTGCGG 29378749 Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764 | || || |||||||||||||| || |||| | ||||||||| | |||| || || Sbjct 29378750 CCATCTTCCAGCTGCTTGCCGGCAAAGATCAACCTCTGTTGGTCTGGAGGAATGCCTTCT 29378809 Query 41765 TTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCACCTCCACCGT 41823 |||| | ||| | |||| || ||| | | ||||| || | ||| ||||||| || Sbjct 29378810 TTGT-CTTGAATCTTTGATTTCACGTTTTCTATGGTGTCACTTGGCTCTACCTCCAGGGT 29378868 Query 41824 TATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || || || || ||||| || ||||| || |||||||| Sbjct 29378869 AATGGTCTTGCCAGTCAGGGTTTTTACAAAGATCTGCAT 29378907 Score = 105 bits (116), Expect = 6e-18 Identities = 157/220 (71%), Gaps = 2/220 (1%) Strand=Plus/Plus Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704 ||||| | || ||||||| ||| |||||||| || || ||||| | ||||||||| Sbjct 29377039 AGACGAAGTACAAGATGCAAGGTGGATTCCTTCTGGATATTGTAGTCACAAAGGGTGCGC 29377098 Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764 | || || ||||||||||| || || |||| | ||||||||| | |||| || || | Sbjct 29377099 CCATCTTCCAGCTGCTTGCCAGCAAAGATCAACCTCTGTTGGTCTGGAGGAATGC-CTTC 29377157 Query 41765 TTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCACCTCCACCGT 41823 || | ||| | |||| || ||| | | ||||| || | ||| ||||| | || Sbjct 29377158 TTTATCTTGAATCTTTGATTTCACGTTTTCTATGGTGTCACTTGGCTCTACCTCTAGGGT 29377217 Query 41824 TATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 || || || || |||| || |||||||| ||||||||| Sbjct 29377218 AATGGTCTTGCCAGTCAAAGTTTTTACGAAGATCTGCATG 29377257 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/194 (72%), Gaps = 2/194 (1%) Strand=Plus/Plus Query 41671 CTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 41730 ||| ||||| || || ||||| | |||||||| | || || |||||||||||||| || Sbjct 29378488 CTCTTTCTGGATATTGTAGTCACAAAGGGTGCGACCATCTTCCAGCTGCTTGCCGGCAAA 29378547 Query 41731 TATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGA 41790 |||| | |||||||| | |||| || || |||| | ||| | |||| || || Sbjct 29378548 GATCAACCTTTGTTGGTCTGGAGGAATGCCTTCTTTGT-CTTGAATCTTTGATTTCACAT 29378606 Query 41791 CGAC-ACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTA 41849 | | ||||| || ||||| ||||||| || || || || || |||| || |||| Sbjct 29378607 TTTCTATGGTGTCACTTGACTCTACCTCCAGGGTAATGGTCTTGCCAGTCAAAGTTTTTA 29378666 Query 41850 CGAAAATCTGCATG 41863 | || ||||||||| Sbjct 29378667 CAAAGATCTGCATG 29378680 >seq1 Length=219802468 Score = 102 bits (112), Expect = 8e-17 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 41654 ACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCG 41713 ||||| || || ||| || ||||||||||| ||||| ||||| ||||| | || || Sbjct 160685425 ACCAGGTGGAGGGTGGATTCTTTCTGAATGTTGTAGTCAGAGAGAGTGCGGCCATCTTCC 160685366 Query 41714 AGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATG 41773 ||||||||||| || ||||||| | ||| ||||| | ||||| || ||||| ||| | Sbjct 160685365 AGCTGCTTGCCAGCAAATATCAATCTCTGCTGGTCAGGGGGAATGCCTTCCTTATCCTGG 160685306 Query 41774 ATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTA 41833 |||||| ||| | | | ||||| || | || || || | || || || || Sbjct 160685305 ATTTTTGCCTTTACATTCTCAATGGTGTCACTTGGTTCAACTTCAAGAGTAATGGTCTTC 160685246 Query 41834 CCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || || | ||||| || || |||||||| Sbjct 160685245 CCAGTTAAGGTCTTGACAAATATCTGCAT 160685217 Score = 100 bits (110), Expect = 3e-16 Identities = 144/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 41660 TGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGC 41719 |||| ||| ||| ||||||||||| ||||| || ||||| | | || || |||||| Sbjct 160684051 TGCAAGGTGGACTCTTTCTGAATGTTGTAGTCTGACAGGGTTCTGCCATCTTCCAGCTGC 160683992 Query 41720 TTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTTT 41779 || || || || |||| | ||| ||||| | ||||| | || ||||| ||||||| Sbjct 160683991 TTACCAGCAAAAATCAATCTCTGCTGGTCAGGGGGAATACCTTCTTTGTCTTGGATTTTT 160683932 Query 41780 TGCTTCAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACCCGTC 41839 ||| | | | |||||| || | ||||||||| | || || || || || ||| Sbjct 160683931 GCCTTTACATTCTCAATAGTGTCACTTGGCTCCACCTCAAGAGTAATTGTCTTCCCTGTC 160683872 Query 41840 AGCGTCTTTACGAAAATCTGCAT 41862 || ||||| || || |||||||| Sbjct 160683871 AGGGTCTTCACAAATATCTGCAT 160683849 Score = 96.9 bits (106), Expect = 3e-15 Identities = 152/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704 ||||| | |||| |||||| ||| || |||||||| || ||||| ||||| ||||| Sbjct 160684750 AGACGAAGGACCAAATGCAGAGTGGATTCTTTCTGAATATTGTAGTCAGAGAGAGTGCGG 160684691 Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764 | || || ||||||||||| || || |||| | |||||||| | |||| | ||| Sbjct 160684690 CCATCTTCCAGCTGCTTGCCTGCAAAGATCAATCTTTGTTGGTCAGGAGGAATTCCTTCC 160684631 Query 41765 TTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTT 41824 || ||| |||||| ||| | | | |||||| || | ||| || || | || Sbjct 160684630 TTATCCTGGATTTTAGCCTTGACATTCTCAATAGTGTCACTTGGCTCAACTTCAAGAGTA 160684571 Query 41825 ATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || || || || || | ||||| || || |||||||| Sbjct 160684570 ATGGTCTTCCCAGTTAAGGTCTTGACAAATATCTGCAT 160684533 Score = 91.5 bits (100), Expect = 1e-13 Identities = 151/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704 ||||| | |||| ||||| || ||||||||||| |||||||| || ||||| | Sbjct 160684294 AGACGAAGGACCAAGTGCAGAGTAGATTCCTTCTGAATATTATAGTCTGACAGGGTTCTT 160684235 Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764 | || || | || ||||| || ||||||| | |||||| || | ||||| || ||| Sbjct 160684234 CCATCTTCCAATTGTTTGCCAGCAAATATCAATCTCTGTTGATCAGGGGGAATGCCTTCC 160684175 Query 41765 TTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTT 41824 ||||| |||||| ||| | | | |||||| || | ||| || || | || Sbjct 160684174 TTGTCTTGGATTTTGGCCTTTACATTCTCAATAGTGTCACTTGGCTCAACTTCAAGAGTA 160684115 Query 41825 ATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || || || || ||||| ||||| || || || ||||| Sbjct 160684114 ATTGTCTTCCCTGTCAGGGTCTTCACAAATATTTGCAT 160684077 Score = 86.0 bits (94), Expect = 6e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 41654 ACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCG 41713 |||| ||||| ||| ||||| |||||||| || || || ||||| || | || || Sbjct 160683829 ACCAAGTGCAGAGTGGATTCCTTTTGAATGTTGTAATCTGACAGGGTTCGTCCATCCTCC 160683770 Query 41714 AGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATG 41773 ||||| ||||| ||||| |||| | |||||||| | ||||| || || || || | Sbjct 160683769 AGCTGTTTGCCAGCGAAGATCAACCTTTGTTGGTCAGGGGGAATGCCTTCTTTATCTTGG 160683710 Query 41774 ATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTA 41833 ||||| |||| | | ||||| || | ||| || || | || || || || Sbjct 160683709 ATTTTAGCTTTCACATTCTCAATTGTGTCACTTGGCTCAACTTCAAGTGTGATGGTCTTC 160683650 Query 41834 CCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865 || || || || || || || ||||||||||| Sbjct 160683649 CCAGTGAGAGTTTTCACAAATATCTGCATGTT 160683618 >seq4 Length=159726490 Score = 100 bits (110), Expect = 3e-16 Identities = 155/219 (71%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704 ||||| | ||| |||||||| || || ||||| || || ||||| || ||||||||| Sbjct 6847685 AGACGAAGCACAAGATGCAGGGTTGATTCTTTCTGGATATTGTAGTCTGAAAGGGTGCGC 6847626 Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764 | || || |||||||||||||| || |||| | ||| ||||| | || | | || Sbjct 6847625 CCATCTTCCAGCTGCTTGCCGGCAAAGATCAACCTCTGCTGGTCTGGAGGGATACCTTCT 6847566 Query 41765 TTGTCCATGATTTTTTGCTTCAAC-GACGACACAGTGTCGCTCGACTCCACCTCCACCGT 41823 |||| | || | ||||||| || | | |||||| || | ||| ||||| | || Sbjct 6847565 TTGT-CTTGGATCTTTGCTTTGACATTCTCAATAGTGTCACTTGGCTCTACCTCTAGGGT 6847507 Query 41824 TATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || || || || ||||| || || || || |||||||| Sbjct 6847506 AATGGTCTTGCCAGTCAGGGTTTTGACAAAGATCTGCAT 6847468 >seq2 Length=179946965 Score = 93.3 bits (102), Expect = 4e-14 Identities = 150/213 (70%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 41654 ACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCG 41713 |||| ||||| ||| ||||| |||||||||||||| || ||||| || | || || Sbjct 133019203 ACCAAGTGCAGAGTGGATTCCTTTTGAATGTTATAGTCTGACAGGGTTCGACCATCTTCC 133019144 Query 41714 AGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATG 41773 ||||| ||||| || || |||| | |||||||| | |||| || || || ||| || Sbjct 133019143 AGCTGTTTGCCAGCAAAAATCAACCTTTGTTGGTCTGGAGGAATGCCTTCTTTATCC-TG 133019085 Query 41774 ATTTTTTGC-TTCAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTT 41832 | |||| || |||| | | ||| || || | ||| || || | || || || || Sbjct 133019084 AATTTTAGCCTTCACATTCTCAATAGTATCACTTGGCTCAACTTCTAGTGTGATGGTCTT 133019025 Query 41833 ACCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865 || || || || || || || ||||||||||| Sbjct 133019024 CCCAGTGAGAGTTTTCACAAATATCTGCATGTT 133018992 Score = 89.7 bits (98), Expect = 5e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 41654 ACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCG 41713 ||||| || || ||| || ||||| ||||| ||||| ||||| ||||| | || || Sbjct 133020571 ACCAGGTGGAGGGTGGATTCTTTCTGTATGTTGTAGTCAGAGAGAGTGCGACCATCTTCC 133020512 Query 41714 AGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATG 41773 ||||||||||| || || |||| | ||||||||| | || | | ||||| ||| | Sbjct 133020511 AGCTGCTTGCCAGCAAAGATCAATCTCTGTTGGTCAGGAGGGATTCCTTCCTTATCCTGG 133020452 Query 41774 ATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTA 41833 |||||| ||| | | | ||||| || | ||| || || | || || || || Sbjct 133020451 ATTTTTGCCTTTACATTCTCAATTGTGTCACTGGGCTCAACTTCAAGGGTAATGGTCTTC 133020392 Query 41834 CCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || || | ||||| || || |||||||| Sbjct 133020391 CCAGTTAAGGTCTTCACAAATATCTGCAT 133020363 Score = 87.8 bits (96), Expect = 2e-12 Identities = 136/192 (71%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 41672 TCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 41731 || ||||| ||||||||||| || ||||| || | || || || |||||||| || || Sbjct 133020097 TCTTTCTGGATGTTATAGTCTGACAGGGTTCGGCCATCTTCCAGTTGCTTGCCAGCAAAA 133020038 Query 41732 ATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGAC 41791 |||| | ||| ||||| | ||||| | || || ||| ||| ||||||| | ||| Sbjct 133020037 ATCAATCTCTGCTGGTCAGGGGGAATACCTTCTTTATCC-TGAATTTTTGCCTTAACATT 133019979 Query 41792 GAC-ACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTAC 41850 | | ||||| || | ||| || || | || || |||||||| || | ||||| || Sbjct 133019978 TTCAATTGTGTCACTTGGCTCAACTTCAAGGGTAATGGTTTTACCAGTTAAGGTCTTGAC 133019919 Query 41851 GAAAATCTGCAT 41862 || || ||||| Sbjct 133019918 AAATATTTGCAT 133019907 Score = 82.4 bits (90), Expect = 7e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 41654 ACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCG 41713 |||| ||||| ||| ||||||||||| || || || || ||||| | | || || Sbjct 133019431 ACCAAGTGCAGAGTGGATTCCTTCTGAATATTGTAATCAGACAGGGTTCTGCCATCTTCC 133019372 Query 41714 AGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATG 41773 | || ||||| || || |||| | ||||| || | ||||| || |||||||| | Sbjct 133019371 AATTGTTTGCCAGCAAAGATCAATCTTTGTTGATCAGGGGGAATGCCTTCCTTGTCTTGG 133019312 Query 41774 ATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTA 41833 ||||| ||| | | | ||| ||||| | ||| ||||| | || || || || Sbjct 133019311 ATTTTGGCCTTGACATTCTCAATAGTATCGCTAGGCTCAACCTCAAGAGTAATTGTCTTC 133019252 Query 41834 CCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 || |||| ||||| || || ||||||||| Sbjct 133019251 CCTGTCAAGGTCTTCACAAATATCTGCATG 133019222 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 461679698899600