Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xenopus_20tropicalis_20[refseq_20GCF_5F000004195.3_202016-07-13] 6,822 sequences; 1,440,398,454 total letters Query= NC_001731.1 Length=190289 Score E Sequences producing significant alignments: (Bits) Value seq4 93.3 5e-14 >seq4 Length=133473341 Score = 93.3 bits (102), Expect = 5e-14 Identities = 154/220 (70%), Gaps = 2/220 (1%) Strand=Plus/Plus Query 83140 CAAGAACTTCTCGAAGTTCCAGGCCACGTCGTTGCGGCACACTGGAGACCAGGCAATGAG 83199 || ||||||||||||||||||||| | ||| || | | ||| || |||||| ||| Sbjct 115421377 CAGGAACTTCTCGAAGTTCCAGGCGATGTCATTCCTACGCACAGGGGACCAGATGATGCT 115421436 Query 83200 CTGGGGGTCGCTCACGAGCGTGCTCATGTCGTCGCTAGGCGCCGGCAG-GGCCTCTCGTA 83258 || ||| || || ||| | | | ||| |||||||| ||| || ||| || | Sbjct 115421437 CTTGGGATCCTGCATGAGGGAGATGGAGTCATCGCTAGGATACGGAAGTTGCCCCT-TCA 115421495 Query 83259 GGAAGGCGAAGAGCGGATGTGCCCTTGCACCGTTGACCTCGCACTTCTCGAAGAGCATAA 83318 |||| | ||||| || || || || | || || || ||| |||||| || | | Sbjct 115421496 GGAAAGTAAAGAGTGGGTGCTCCTTTTCTCCATTCACGTCGACCTTCTCAAACAAGGGGA 115421555 Query 83319 AGTTCGGCTCGAAGCCGTTCCCAGGACGGACGTGCTTCAG 83358 |||| || |||||||| |||||||||||| |||||||| Sbjct 115421556 AGTTGGGTTCGAAGCCACCCCCAGGACGGACATGCTTCAG 115421595 Score = 87.8 bits (96), Expect = 2e-12 Identities = 109/147 (74%), Gaps = 2/147 (1%) Strand=Plus/Plus Query 83391 CCTGGTGACCGAACTGGTTACACGGGAACCCAAGCACTACCAGCCCCCGAGCTCC-TAGG 83449 ||||||| |||||||||||||| ||||| | || || |||||| || | || || Sbjct 115425571 CCTGGTGTCCGAACTGGTTACAGGGGAAGGCGAGAACCTGCAGCCCGCGGGGGCCATACA 115425630 Query 83450 CGCCGCTGCAGCTCGTTCATCTGAGTGTACTCCCGGACCGTGCTACCTCAGAGGGACGCT 83509 || ||||||| | ||||||| || || ||||||| || | |||||||| ||||| Sbjct 115425631 TGCT-CTGCAGCCGGCTCATCTGGGTATAATCCCGGATGGTTGTGCCTCAGAGAGACGCC 115425689 Query 83510 ACGTTCTCGATGAGCAAGACCCGGCCC 83536 || ||||||||||| | || | |||| Sbjct 115425690 ACATTCTCGATGAGAAGCACTCTGCCC 115425716 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 608744884852880