Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xenopus_20tropicalis_20[refseq_20GCF_5F000004195.3_202016-07-13] 6,822 sequences; 1,440,398,454 total letters Query= NC_001875.2 Length=131995 Score E Sequences producing significant alignments: (Bits) Value seq2 125 6e-24 seq1 123 2e-23 >seq2 Length=170201513 Score = 125 bits (138), Expect = 6e-24 Identities = 168/234 (72%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 20947 TTCCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCG 21006 |||| |||| ||| | || || | ||||| ||||| || || || || |||||||| | Sbjct 31610908 TTCCACCTCTCAGACGAAGGACAAGATGCAGGGTGGATTCTTTCTGGATATTATAGTCAG 31610849 Query 21007 CCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGG 21066 ||||| || | || |||||||| ||||| ||| | || | ||||||||||| || Sbjct 31610848 AAAGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATCAACCTCTGCTGGTCTGGGG 31610789 Query 21067 GCACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCG 21126 | | ||||| ||||| ||||||| ||| || | | | || |||| ||||| Sbjct 31610788 GGATACCTTCTTTGTCTTGGATCTTTGCTTTGACATTCTCTATTGTGTCACTTGGCTCAA 31610729 Query 21127 TTTCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCATTTTGA 21180 ||||| ||||||||| ||||| || | ||||| ||||| || |||||| ||| Sbjct 31610728 CTTCCAAGGTAATGGTTTTGCCAGTCAGGGTTTTCACAAAGATCTGCATTCTGA 31610675 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || |||| ||| | || || | ||||| ||||| || ||||| ||||| ||||| | Sbjct 31611818 CCACCTCTCAGACGAAGGACAAGATGCAGGGTGGATTCTTTTTGGATGTTGTAGTCAGAA 31611759 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 ||||| || | || |||||||| ||||| ||| | || | ||||||||||| || Sbjct 31611758 AGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATCAACCTCTGCTGGTCTGGAGGG 31611699 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | ||||| ||||| ||||||| ||| || | | | || |||| ||||| Sbjct 31611698 ATACCTTCTTTGTCTTGGATCTTTGCTTTGACATTCTCTATTGTGTCACTTGGCTCTACC 31611639 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCATT 21176 |||| ||| ||||||||||| || | ||||| ||||| || |||||| Sbjct 31611638 TCCAAGGTGATGGTCTTGCCAGTCAGGGTTTTTACAAAGATCTGCATT 31611591 Score = 113 bits (124), Expect = 4e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 20947 TTCCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCG 21006 |||| |||| ||| | || || | ||||| ||||| || || || ||||| ||||| | Sbjct 31611364 TTCCACCTCTCAGACGAAGGACAAGATGCAGGGTGGATTCTTTCTGGATGTTGTAGTCAG 31611305 Query 21007 CCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGG 21066 ||||| || | || |||||||| ||||| ||| | || | ||||||||||| | Sbjct 31611304 AAAGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATCAACCTCTGCTGGTCTGGAG 31611245 Query 21067 GCACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCG 21126 | | ||||| ||||| ||||||| ||| || | | | || |||| ||||| Sbjct 31611244 GGATACCTTCTTTGTCTTGGATCTTTGCTTTGACATTCTCTATTGTGTCACTTGGCTCTA 31611185 Query 21127 TTTCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCATT 21176 |||| ||| ||||||||||| || | ||||| ||||| || |||||| Sbjct 31611184 CCTCCAGGGTGATGGTCTTGCCAGTCAGGGTTTTTACAAAGATCTGCATT 31611135 Score = 109 bits (120), Expect = 5e-19 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 20947 TTCCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCG 21006 |||| |||| ||| | || || | ||||| ||||| || || || || |||||||| | Sbjct 31611592 TTCCACCTCTCAGACGAAGGACAAGATGCAGGGTGGATTCTTTCTGGATATTATAGTCAG 31611533 Query 21007 CCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGG 21066 || || || | || |||||||| ||||| ||| | || | ||||||||||| | Sbjct 31611532 AAAGTGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATCAACCTCTGCTGGTCTGGAG 31611473 Query 21067 GCACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCG 21126 | | ||||| ||||| ||||||| ||| || | | | || |||| ||||| Sbjct 31611472 GGATACCTTCTTTGTCTTGGATCTTTGCTTTGACATTCTCTATTGTGTCACTTGGCTCTA 31611413 Query 21127 TTTCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCATT 21176 |||| ||| ||||||||||| || | ||||| ||||| || |||||| Sbjct 31611412 CCTCCAGGGTGATGGTCTTGCCAGTCAGGGTTTTTACAAAGATCTGCATT 31611363 Score = 109 bits (120), Expect = 5e-19 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 20947 TTCCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCG 21006 |||| |||| ||| | || || | ||||| ||||| || || || ||||| ||||| Sbjct 31802930 TTCCACCTCTCAGACGAAGTACAAGATGCAGGGTGGATTCTTTCTGGATGTTGTAGTCAC 31802871 Query 21007 CCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGG 21066 ||||| || | || |||||||| ||||| ||| | || | ||||||||||| | Sbjct 31802870 AAAGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAACCTCTGCTGGTCTGGAG 31802811 Query 21067 GCACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCG 21126 | | ||||| ||||| ||||||| ||| || | | | || |||| ||||| Sbjct 31802810 GGATACCTTCTTTGTCTTGGATCTTTCCTTTGACATTCTCTATTGTGTCACTTGGCTCTA 31802751 Query 21127 TTTCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCATT 21176 |||| |||||||||||||| || | ||||| ||||| || |||||| Sbjct 31802750 CCTCCAGAGTAATGGTCTTGCCAGTCAGGGTTTTTACAAAGATCTGCATT 31802701 Score = 109 bits (120), Expect = 5e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || |||| ||| | || || | ||||| ||| || || || || || |||||||| Sbjct 31803384 CCACCTCTCAGACGAAGGACAAGATGCAGAGTTGATTCTTTCTGGATATTATAGTCACAA 31803325 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 ||||| || | || |||||||| ||||| ||| | || | ||||||||||| ||| Sbjct 31803324 AGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATCAACCTCTGCTGGTCTGGGGGG 31803265 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | ||||| ||||| ||||||| ||| || | | | || |||| ||||| Sbjct 31803264 ATACCTTCTTTGTCTTGGATCTTTGATTTAACATTCTCAATGGTGTCACTTGGCTCTACC 31803205 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCATT 21176 |||| ||| ||||||||||| || | ||||| ||||| || |||||| Sbjct 31803204 TCCAGGGTGATGGTCTTGCCAGTCAGGGTTTTTACAAAGATCTGCATT 31803157 Score = 104 bits (114), Expect = 2e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 20947 TTCCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCG 21006 |||| |||| ||| | || || | ||||| ||||| || || || || |||||||| | Sbjct 31611136 TTCCACCTCTCAGACGAAGGACAAGATGCAGGGTGGATTCTTTCTGGATATTATAGTCAG 31611077 Query 21007 CCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGG 21066 || || | | || |||||||| ||||| ||| | || | ||||||||||| | Sbjct 31611076 AAAGTGTGCGACCATCTTCCAGCTGCTTGCCGGCAAAGATCAACCTCTGCTGGTCTGGAG 31611017 Query 21067 GCACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCG 21126 | | ||||| ||||| ||||||| ||| || | | | || |||| ||||| Sbjct 31611016 GGATACCTTCTTTGTCTTGGATCTTTGCTTTGACATTCTCTATTGTGTCACTTGGCTCTA 31610957 Query 21127 TTTCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCATT 21176 |||| ||| ||||||||||| || | ||||| ||||| || |||||| Sbjct 31610956 CCTCCAGGGTGATGGTCTTGCCAGTCAGGGTTTTTACAAAGATCTGCATT 31610907 Score = 100 bits (110), Expect = 2e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 20947 TTCCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCG 21006 |||| |||| ||| | || || | ||||| ||||| ||||| || || || ||||| Sbjct 31803158 TTCCACCTCTCAGACGAAGGACAAGATGCAGGGTGGATTCCTTCTGGATATTGTAGTCAC 31803099 Query 21007 CCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGG 21066 ||||| || | || || || || ||||| ||| | || | ||||||||||| | Sbjct 31803098 AAAGGGTGCGGCCATCTTCTAGTTGCTTGCCGGCAAAGATCAACCTCTGCTGGTCTGGAG 31803039 Query 21067 GCACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCG 21126 | | ||||| ||||| ||||||| ||| || | | | || |||| ||||| Sbjct 31803038 GGATACCTTCTTTGTCTTGGATCTTTGATTTAACATTCTCTATGGTGTCACTTGGCTCTA 31802979 Query 21127 TTTCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCATT 21176 |||| ||| ||||||||||| || | ||||| ||||| || |||||| Sbjct 31802978 CCTCCAGGGTGATGGTCTTGCCAGTCAGGGTTTTTACAAAGATCTGCATT 31802929 Score = 98.7 bits (108), Expect = 8e-16 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 20947 TTCCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCG 21006 |||| || | ||| | || || | ||||| ||| ||||| ||||| || || || || | Sbjct 31802702 TTCCACCCCTCAGACGAAGGACAAGATGCAGAGTTGACTCTTTTTGTATATTGTAATCAG 31802643 Query 21007 CCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGG 21066 | || | || || || ||||| ||||| ||| | || | ||||||||||| || Sbjct 31802642 CAAGACTACGGCAATCTTCAAGCTGCTTGCCGGCAAAGATCAACCTCTGCTGGTCTGGGG 31802583 Query 21067 GCACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCG 21126 | | ||||| ||||| ||||||| ||| || | | | || |||| ||||| Sbjct 31802582 GGATACCTTCTTTGTCTTGGATCTTTGCTTTGACATTCTCTATTGTGTCACTTGGCTCTA 31802523 Query 21127 TTTCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 |||| ||| ||||||||||| || | ||||| ||||| || ||||| Sbjct 31802522 CCTCCAGGGTGATGGTCTTGCCAGTCAGGGTTTTTACAAAGATCTGCAT 31802474 >seq1 Length=194866763 Score = 123 bits (136), Expect = 2e-23 Identities = 149/203 (73%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 20973 TGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTGT 21032 ||||| ||||| || ||||||||||| ||||| | || || | | || |||||||| Sbjct 151539284 TGCAAGGTGGATTCTTTTTGAATGTTGTAGTCAGAAAGAGTGCGACCATCTTCCAGCTGC 151539225 Query 21033 TTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTTT 21092 ||||| ||| |||| | |||||||||||| ||| | |||||||||||| ||| ||| Sbjct 151539224 TTGCCAGCAAAAATCAATCTCTGCTGGTCAGGGGGAATGCCTTCCTTGTCTTGGATTTTT 151539165 Query 21093 TGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTGCCGGTT 21152 || || | | | |||||||| ||||| || | |||||||||||| || || Sbjct 151539164 GCCTTTACATTCTCAATAGTATCACTTGGCTCAACCTCAAGGGTAATGGTCTTCCCAGTC 151539105 Query 21153 AACGTTTTGACAAATATTTGCAT 21175 | || || |||||||| ||||| Sbjct 151539104 AGGGTCTTCACAAATATCTGCAT 151539082 Score = 113 bits (124), Expect = 4e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || |||| || | ||| |||| ||||| |||||| |||||||| ||||||||||| | Sbjct 151539080 CCACCTCTCAAACGGAGAACCAAATGCAGAGTGGATTCCTTTTGGATGTTATAGTCTGAT 151539021 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 | |||| || | || |||||||||||||| ||| | || | || || || || || Sbjct 151539020 AAGGTTCGGCCATCTTCCAGCTGTTTGCCAGCAAAGATCAACCTTTGTTGATCTGGAGGA 151538961 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | |||||| || || || || ||||| | | | ||| |||| ||||| | Sbjct 151538960 ATGCCTTCTTTATCCTGTATTTTAGCCTTCACATTTTCAATAGTGTCACTTGGCTCAACT 151538901 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCATTTT 21178 || | || |||||||| || || | |||||| |||||||| ||||| || Sbjct 151538900 TCTAGTGTGATGGTCTTCCCAGTGAGCGTTTTCACAAATATCTGCATGTT 151538851 Score = 98.7 bits (108), Expect = 8e-16 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 20964 AGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCC 21023 || |||| |||| ||||| || || |||||||| || || | || || || | || Sbjct 151539749 AGGACCAGGTGCAGGGTGGATTCTTTCTGAATGTTGTAATCAGAGAGAGTGCGGCCATCT 151539690 Query 21024 TCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCG 21083 |||||||| ||||| ||| | || | ||||||||||| ||| | ||||||||| || Sbjct 151539689 TCCAGCTGCTTGCCTGCAAAGATCAACCTCTGCTGGTCAGGGGGAATGCCTTCCTTATCT 151539630 Query 21084 GCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTC 21143 ||| ||| || || | | | || |||| |||||| ||| | ||||||||| Sbjct 151539629 TGGATTTTTGCCTTTACATTCTCAATTGTGTCACTGGGCTCAACTTCAAGAGTAATGGTC 151539570 Query 21144 TTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 || || || | || |||||||| || ||||| Sbjct 151539569 TTCCCAGTCAGGGTCTTGACAAAAATCTGCAT 151539538 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 422224092050552