Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xenopus_20tropicalis_20[refseq_20GCF_5F000004195.3_202016-07-13] 6,822 sequences; 1,440,398,454 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq2 118 1e-21 seq1 105 7e-18 >seq2 Length=170201513 Score = 118 bits (130), Expect = 1e-21 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCAC 40748 |||||| || || |||||||| || || ||||| ||||||||| | || || || | | Sbjct 31611135 AATGCAGATCTTTGTAAAAACCCTGACTGGCAAGACCATCACCCTGGAGGTAGAGCCAAG 31611194 Query 40749 CGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | |||| | ||| || | |||||||| || ||||| | ||||| Sbjct 31611195 TGACACAATAGAGAATGTCAAAGCAAAGATCCAAGACAAAGAAGGTATCCCTCCAGACCA 31611254 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| | | |||| || ||||| |||||||| || | |||||||| |||||||| Sbjct 31611255 GCAGAGGTTGATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACCCTTTCTGACTACAA 31611314 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 ||||||||| || |||| |||||||| || | || |||| || || Sbjct 31611315 CATCCAGAAAGAATCCACCCTGCATCTTGTCCTTCGTCTGAGAGGTGG 31611362 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCAC 40748 |||||| || || |||||||| || || ||||| ||||||||| | || || || | | Sbjct 31611591 AATGCAGATCTTTGTAAAAACCCTGACTGGCAAGACCATCACCTTGGAGGTAGAGCCAAG 31611650 Query 40749 CGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | |||| | ||| || | |||||||| || ||||| | ||||| Sbjct 31611651 TGACACAATAGAGAATGTCAAAGCAAAGATCCAAGACAAAGAAGGTATCCCTCCAGACCA 31611710 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| | | |||| || ||||| |||||||| || | |||||||| |||||||| Sbjct 31611711 GCAGAGGTTGATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACCCTTTCTGACTACAA 31611770 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 |||||| || || |||| |||||||| || | || |||| || || Sbjct 31611771 CATCCAAAAAGAATCCACCCTGCATCTTGTCCTTCGTCTGAGAGGTGG 31611818 Score = 109 bits (120), Expect = 6e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCAC 40748 |||||| || || || ||||| || || ||||||||||| ||| | || || || | | Sbjct 31610679 AATGCAGATCTTTGTGAAAACCCTGACTGGCAAAACCATTACCTTGGAAGTTGAGCCAAG 31610738 Query 40749 CGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | |||| | ||| || | |||||||| || |||||| | ||||| Sbjct 31610739 TGACACAATAGAGAATGTCAAAGCAAAGATCCAAGACAAAGAAGGTATCCCCCCAGACCA 31610798 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| | | |||| || ||||| |||||||| || | |||||||| ||||| || Sbjct 31610799 GCAGAGGTTGATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACCCTTTCTGACTATAA 31610858 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 |||||||| || |||| |||||||| || | || |||| || || Sbjct 31610859 TATCCAGAAAGAATCCACCCTGCATCTTGTCCTTCGTCTGAGAGGTGG 31610906 Score = 109 bits (120), Expect = 6e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCAC 40748 |||||| || || |||||||| || || ||||| ||||| || | || || || | | Sbjct 31802701 AATGCAGATCTTTGTAAAAACCCTGACTGGCAAGACCATTACTCTGGAGGTAGAGCCAAG 31802760 Query 40749 CGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | |||| | ||| || | |||||||| || ||||| | ||||| Sbjct 31802761 TGACACAATAGAGAATGTCAAAGGAAAGATCCAAGACAAAGAAGGTATCCCTCCAGACCA 31802820 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| | | |||| || ||||| |||||||| || | |||||||| |||||||| Sbjct 31802821 GCAGAGGTTGATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGCACCCTTTGTGACTACAA 31802880 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 ||||||||| || |||| |||||||| || | || |||| || || Sbjct 31802881 CATCCAGAAAGAATCCACCCTGCATCTTGTACTTCGTCTGAGAGGTGG 31802928 Score = 105 bits (116), Expect = 7e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCAC 40748 |||||| || || |||||||| || || ||||| ||||||||| | || || || | | Sbjct 31802929 AATGCAGATCTTTGTAAAAACCCTGACTGGCAAGACCATCACCCTGGAGGTAGAGCCAAG 31802988 Query 40749 CGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | | | || ||| || | |||||||| || ||||| | ||||| Sbjct 31802989 TGACACCATAGAGAATGTTAAATCAAAGATCCAAGACAAAGAAGGTATCCCTCCAGACCA 31803048 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| | | |||| || ||||| || || || || | |||||||| |||||||| Sbjct 31803049 GCAGAGGTTGATCTTTGCCGGCAAGCAACTAGAAGATGGCCGCACCCTTTGTGACTACAA 31803108 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 ||||||||||| |||| |||||||| || | || |||| || || Sbjct 31803109 TATCCAGAAGGAATCCACCCTGCATCTTGTCCTTCGTCTGAGAGGTGG 31803156 >seq1 Length=194866763 Score = 105 bits (116), Expect = 7e-18 Identities = 145/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||||||||| || || || || || || ||||| || ||| | || || ||| | | Sbjct 151539310 ATGCAAATATTTGTGAAGACCCTGACTGGTAAAACAATAACCCTTGAGGTTGAACCAAGT 151539369 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | ||| | || | |||||||| |||||||| || || || | |||||| Sbjct 151539370 GACACCATTGAAAATGTAAAAGCAAAAATTCAAGACAAAGAAGGTATTCCTCCCGACCAG 151539429 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || || | |||| || || || |||||||| || | ||||| ||| || |||||| Sbjct 151539430 CAGAGATTGATCTTTGCCGGAAAGCAGCTGGAAGATGGCCGCACACTCTCTGATTACAAC 151539489 Query 40870 ATCCAGAAGGAGGCCACGCTGCA 40892 || ||||| || |||| ||||| Sbjct 151539490 ATTCAGAAAGAATCCACACTGCA 151539512 Score = 104 bits (114), Expect = 2e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 || ||||| ||||| || ||||||||||| || || |||||||| | || || || | Sbjct 151538851 AACATGCAGATATTTGTGAAAACGCTCACTGGGAAGACCATCACACTAGAAGTTGAGCCA 151538910 Query 40747 ACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGAC 40806 | |||| | ||| | |||| ||||| | || ||||| ||||| || | || Sbjct 151538911 AGTGACACTATTGAAAATGTGAAGGCTAAAATACAGGATAAAGAAGGCATTCCTCCAGAT 151538970 Query 40807 CAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 40866 || ||| | | |||| || |||||||||||||| || | || ||| | ||||| Sbjct 151538971 CAACAAAGGTTGATCTTTGCTGGCAAACAGCTGGAAGATGGCCGAACCTTATCAGACTAT 151539030 Query 40867 AACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 |||||||| ||||| |||| |||||| | || | || ||||| || || Sbjct 151539031 AACATCCAAAAGGAATCCACTCTGCATTTGGTTCTCCGTTTGAGAGGTGG 151539080 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515175264682720