Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xenopus_20tropicalis_20[refseq_20GCF_5F000004195.3_202016-07-13] 6,822 sequences; 1,440,398,454 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq1 145 1e-29 seq2 109 8e-19 >seq1 Length=194866763 Score = 145 bits (160), Expect = 1e-29 Identities = 170/230 (74%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| |||||| | || || || || || || || || || |||| |||| ||| | Sbjct 151538854 ATGCAGATATTTGTGAAAACGCTCACTGGGAAGACCATCACACTAGAAGTTGAGCCAAGT 151538913 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || || ||| ||| | || ||||| || ||||||||||| || || || |||||| Sbjct 151538914 GACACTATTGAAAATGTGAAGGCTAAAATACAGGATAAAGAAGGCATTCCTCCAGATCAA 151538973 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 |||||| | || ||||| || ||||| | || ||| | ||||| ||| ||| ||||| Sbjct 151538974 CAAAGGTTGATCTTTGCTGGCAAACAGCTGGAAGATGGCCGAACCTTATCAGACTATAAC 151539033 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 || ||||| ||||| ||| ||||||||||| | ||||| ||||||| || Sbjct 151539034 ATCCAAAAGGAATCCACTCTGCATTTGGTTCTCCGTTTGAGAGGTGGGAT 151539083 Score = 145 bits (160), Expect = 1e-29 Identities = 170/230 (74%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||||||| | ||||| || || || ||||| ||||| | ||| ||||| ||| | Sbjct 151539310 ATGCAAATATTTGTGAAGACCCTGACTGGTAAAACAATAACCCTTGAGGTTGAACCAAGT 151539369 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || || ||| ||| ||||| ||||||||||| ||||||||||| || || || || Sbjct 151539370 GACACCATTGAAAATGTAAAAGCAAAAATTCAAGACAAAGAAGGTATTCCTCCCGACCAG 151539429 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || || | || ||||| ||||| || | || ||| | || ||| | ||||| || Sbjct 151539430 CAGAGATTGATCTTTGCCGGAAAGCAGCTGGAAGATGGCCGCACACTCTCTGATTACAAC 151539489 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 ||||| |||||||| || |||| |||||| | ||| | ||||||| || Sbjct 151539490 ATTCAGAAAGAATCCACACTGCACTTGGTTCTTCGTCTCAGAGGTGGGAT 151539539 Score = 118 bits (130), Expect = 2e-21 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| |||||| | ||||| || || || || || || || | ||| |||| ||| | Sbjct 151539082 ATGCAGATATTTGTGAAGACCCTGACTGGGAAGACCATTACCCTTGAGGTTGAGCCAAGT 151539141 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 ||||| ||| ||| |||| ||||| ||||| || ||||| || || ||||| || Sbjct 151539142 GATACTATTGAGAATGTAAAGGCAAAAATCCAAGACAAGGAAGGCATTCCCCCTGACCAG 151539201 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || || | |||||||| || || || | || ||| |||| || | || || || Sbjct 151539202 CAGAGATTGATTTTTGCTGGCAAGCAGCTGGAAGATGGTCGCACTCTTTCTGACTACAAC 151539261 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 |||||||||||||| || ||||| || ||| | ||| | ||||||| || Sbjct 151539262 ATTCAAAAAGAATCCACCTTGCACTTAGTTCTTCGTCTCAGAGGTGGGAT 151539311 >seq2 Length=170201513 Score = 109 bits (120), Expect = 8e-19 Identities = 163/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597 |||||| || ||| |||| || || || ||||| || || || | ||| | || ||| Sbjct 31803157 AATGCAGATCTTTGTAAAAACCCTGACTGGCAAGACCATCACCCTGGAGGTAGAGCCAAG 31803216 Query 124598 TGATACAATTTCTAAT-TTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATC 124656 ||| || ||| ||| ||||| || || || ||||| ||||||||||| || || || | Sbjct 31803217 TGACACCATTGAGAATGTTAAATCA-AAGATCCAAGACAAAGAAGGTATCCCCCCAGACC 31803275 Query 124657 AACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATA 124716 | || ||| | || ||||| || || || | || ||| | || || | || |||| Sbjct 31803276 AGCAGAGGTTGATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACCCTTTGTGACTATA 31803335 Query 124717 ATATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGG 124765 |||| || |||||||||||| ||||| | || | ||| | ||||||| Sbjct 31803336 ATATCCAGAAAGAATCAACTCTGCATCTTGTCCTTCGTCTGAGAGGTGG 31803384 Score = 105 bits (116), Expect = 1e-17 Identities = 162/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597 |||||| || ||| |||| || || || ||||| || || || | ||| | || ||| Sbjct 31610907 AATGCAGATCTTTGTAAAAACCCTGACTGGCAAGACCATCACCCTGGAGGTAGAGCCAAG 31610966 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 ||| ||||| ||| | ||| || || ||||| ||||||||||| || || || || Sbjct 31610967 TGACACAATAGAGAATGTCAAAGCAAAGATCCAAGACAAAGAAGGTATCCCTCCAGACCA 31611026 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 || ||| | || ||||| || || || | || ||| |||| ||| | || ||||| Sbjct 31611027 GCAGAGGTTGATCTTTGCCGGCAAGCAGCTGGAAGATGGTCGCACACTTTCTGACTATAA 31611086 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 ||| || |||||||| || ||||| | || | ||| | ||||||| || Sbjct 31611087 TATCCAGAAAGAATCCACCCTGCATCTTGTCCTTCGTCTGAGAGGTGGAAT 31611137 Score = 102 bits (112), Expect = 1e-16 Identities = 161/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597 |||||| || ||| |||| || || || ||||| || || || | ||| | || ||| Sbjct 31611363 AATGCAGATCTTTGTAAAAACCCTGACTGGCAAGACCATCACCCTGGAGGTAGAGCCAAG 31611422 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 ||| ||||| ||| | ||| || || ||||| ||||||||||| || || || || Sbjct 31611423 TGACACAATAGAGAATGTCAAAGCAAAGATCCAAGACAAAGAAGGTATCCCTCCAGACCA 31611482 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 || ||| | || ||||| || || || | || ||| | || ||| | || ||||| Sbjct 31611483 GCAGAGGTTGATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACACTTTCTGACTATAA 31611542 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 ||| || |||||||| || ||||| | || | ||| | ||||||| || Sbjct 31611543 TATCCAGAAAGAATCCACCCTGCATCTTGTCCTTCGTCTGAGAGGTGGAAT 31611593 Score = 100 bits (110), Expect = 4e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || ||| |||| || || || ||||| || || || | ||| | || ||| | Sbjct 31802474 ATGCAGATCTTTGTAAAAACCCTGACTGGCAAGACCATCACCCTGGAGGTAGAGCCAAGT 31802533 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || ||||| ||| | ||| || || ||||| ||||||||||| || || || || Sbjct 31802534 GACACAATAGAGAATGTCAAAGCAAAGATCCAAGACAAAGAAGGTATCCCCCCAGACCAG 31802593 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || ||| | || ||||| || || || | || ||| | || | | | ||||| ||| Sbjct 31802594 CAGAGGTTGATCTTTGCCGGCAAGCAGCTTGAAGATTGCCGTAGTCTTGCTGATTACAAT 31802653 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 || |||||||| |||||| ||||| | || | ||| | | ||||| || Sbjct 31802654 ATACAAAAAGAGTCAACTCTGCATCTTGTCCTTCGTCTGAGGGGTGGAAT 31802703 Score = 96.9 bits (106), Expect = 5e-15 Identities = 160/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597 |||||| || ||| | || || || || |||||||| || || | || |||| ||| Sbjct 31610679 AATGCAGATCTTTGTGAAAACCCTGACTGGCAAAACCATTACCTTGGAAGTTGAGCCAAG 31610738 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 ||| ||||| ||| | ||| || || ||||| ||||||||||| || || || || Sbjct 31610739 TGACACAATAGAGAATGTCAAAGCAAAGATCCAAGACAAAGAAGGTATCCCCCCAGACCA 31610798 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 || ||| | || ||||| || || || | || ||| | || || | || ||||| Sbjct 31610799 GCAGAGGTTGATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACCCTTTCTGACTATAA 31610858 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 ||| || |||||||| || ||||| | || | ||| | ||||||| || Sbjct 31610859 TATCCAGAAAGAATCCACCCTGCATCTTGTCCTTCGTCTGAGAGGTGGAAT 31610909 Score = 96.9 bits (106), Expect = 5e-15 Identities = 162/232 (70%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597 |||||| || ||| |||| || || || ||||| || || || | ||| | || ||| Sbjct 31802929 AATGCAGATCTTTGTAAAAACCCTGACTGGCAAGACCATCACCCTGGAGGTAGAGCCAAG 31802988 Query 124598 TGATACAATTTCTAAT-TTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATC 124656 ||| || || ||| ||||| || || || ||||| ||||||||||| || || || | Sbjct 31802989 TGACACCATAGAGAATGTTAAATCA-AAGATCCAAGACAAAGAAGGTATCCCTCCAGACC 31803047 Query 124657 AACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATA 124716 | || ||| | || ||||| || || ||| |||| ||| | || || | || || | Sbjct 31803048 AGCAGAGGTTGATCTTTGCCGGCAAGCAACTAGAAGATGGCCGCACCCTTTGTGACTACA 31803107 Query 124717 ATATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 |||| || || ||||| || ||||| | || | ||| | ||||||| || Sbjct 31803108 ATATCCAGAAGGAATCCACCCTGCATCTTGTCCTTCGTCTGAGAGGTGGAAT 31803159 Score = 93.3 bits (102), Expect = 6e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597 |||||| || ||| |||| || || || ||||| || || || | ||| | || ||| Sbjct 31611591 AATGCAGATCTTTGTAAAAACCCTGACTGGCAAGACCATCACCTTGGAGGTAGAGCCAAG 31611650 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 ||| ||||| ||| | ||| || || ||||| ||||||||||| || || || || Sbjct 31611651 TGACACAATAGAGAATGTCAAAGCAAAGATCCAAGACAAAGAAGGTATCCCTCCAGACCA 31611710 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 || ||| | || ||||| || || || | || ||| | || || | || || || Sbjct 31611711 GCAGAGGTTGATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACCCTTTCTGACTACAA 31611770 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGT 124766 || ||||||||||| || ||||| | || | ||| | |||||||| Sbjct 31611771 CATCCAAAAAGAATCCACCCTGCATCTTGTCCTTCGTCTGAGAGGTGGT 31611819 Score = 93.3 bits (102), Expect = 6e-14 Identities = 159/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597 |||||| || ||| |||| || || || ||||| || || ||| | ||| | || ||| Sbjct 31802701 AATGCAGATCTTTGTAAAAACCCTGACTGGCAAGACCATTACTCTGGAGGTAGAGCCAAG 31802760 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 ||| ||||| ||| | ||| || || ||||| ||||||||||| || || || || Sbjct 31802761 TGACACAATAGAGAATGTCAAAGGAAAGATCCAAGACAAAGAAGGTATCCCTCCAGACCA 31802820 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 || ||| | || ||||| || || || | || ||| | || || | || || || Sbjct 31802821 GCAGAGGTTGATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGCACCCTTTGTGACTACAA 31802880 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 || || |||||||| || ||||| | || | ||| | ||||||| || Sbjct 31802881 CATCCAGAAAGAATCCACCCTGCATCTTGTACTTCGTCTGAGAGGTGGAAT 31802931 Score = 87.8 bits (96), Expect = 3e-12 Identities = 158/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597 |||||| || ||| |||| || || || ||||| || || || | ||| | || ||| Sbjct 31611135 AATGCAGATCTTTGTAAAAACCCTGACTGGCAAGACCATCACCCTGGAGGTAGAGCCAAG 31611194 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 ||| ||||| ||| | ||| || || ||||| ||||||||||| || || || || Sbjct 31611195 TGACACAATAGAGAATGTCAAAGCAAAGATCCAAGACAAAGAAGGTATCCCTCCAGACCA 31611254 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 || ||| | || ||||| || || || | || ||| | || || | || || || Sbjct 31611255 GCAGAGGTTGATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACCCTTTCTGACTACAA 31611314 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 || || |||||||| || ||||| | || | ||| | ||||||| || Sbjct 31611315 CATCCAGAAAGAATCCACCCTGCATCTTGTCCTTCGTCTGAGAGGTGGAAT 31611365 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 755391578489600