Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xenopus_20tropicalis_20[refseq_20GCF_5F000004195.3_202016-07-13] 6,822 sequences; 1,440,398,454 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq1 123 2e-23 seq2 95.1 1e-14 >seq1 Length=194866763 Score = 123 bits (136), Expect = 2e-23 Identities = 155/210 (74%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||||||| | ||| || ||||| |||||||||||||| | ||||| ||| || Sbjct 151539518 ACCAAGTGCAGTGTGGATTCTTTCTGAATGTTGTAATCAGAGAGTGTGCGGCCATCTTCC 151539459 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 ||||| ||||| || |||| | | |||||| |||||||| || || || |||||| | Sbjct 151539458 AGCTGCTTTCCGGCAAAGATCAATCTCTGCTGGTCGGGAGGAATACCTTCTTTGTCTTGA 151539399 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTC-CGTGCTCTCGACCTCGACGGTCACCGTTTT 118708 |||||| ||| || | ||| | |||||| | || | || ||||| | ||| | ||||| Sbjct 151539398 ATTTTTGCTTTTACATTTTCAATGGTGTCACTTGGT-TCAACCTCAAGGGTTATTGTTTT 151539340 Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || ||||| || || ||||| || ||||| Sbjct 151539339 ACCAGTCAGGGTCTTCACAAATATTTGCAT 151539310 Score = 93.3 bits (102), Expect = 4e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 || ||||| | || || ||||||||||||||||| || | |||||| ||| || Sbjct 151539290 ACTAAGTGCAAGGTGGATTCTTTTTGAATGTTGTAGTCAGAAAGAGTGCGACCATCTTCC 151539231 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 ||||| || ||||| | || | | |||||| || || || ||||| ||||||||| Sbjct 151539230 AGCTGCTTGCCAGCAAAAATCAATCTCTGCTGGTCAGGGGGAATGCCTTCCTTGTCTTGG 151539171 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 |||||| || || | || | || || | ||| ||||| | ||| | || || Sbjct 151539170 ATTTTTGCCTTTACATTCTCAATAGTATCACTTGGCTCAACCTCAAGGGTAATGGTCTTC 151539111 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || ||||| || || ||||| |||||||| Sbjct 151539110 CCAGTCAGGGTCTTCACAAATATCTGCAT 151539082 Score = 93.3 bits (102), Expect = 4e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||| ||| | || || ||||| |||||||||||||| | |||||| ||| || Sbjct 151539746 ACCAGGTGCAGGGTGGATTCTTTCTGAATGTTGTAATCAGAGAGAGTGCGGCCATCTTCC 151539687 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 ||||| || || || |||| | | |||||| || || || ||||| ||||| ||| Sbjct 151539686 AGCTGCTTGCCTGCAAAGATCAACCTCTGCTGGTCAGGGGGAATGCCTTCCTTATCTTGG 151539627 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 |||||| || || | || | ||||| || ||| || || | || | || || Sbjct 151539626 ATTTTTGCCTTTACATTCTCAATTGTGTCACTGGGCTCAACTTCAAGAGTAATGGTCTTC 151539567 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || ||||| || || |||||||||||||| Sbjct 151539566 CCAGTCAGGGTCTTGACAAAAATCTGCAT 151539538 >seq2 Length=170201513 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601 || || |||||||| |||||||| || | ||||| ||| || ||||| || || Sbjct 31611788 GTGGATTCTTTTTGGATGTTGTAGTCAGAAAGGGTGCGGCCATCTTCCAGCTGCTTGCCG 31611729 Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661 || |||| | | |||||| || ||||| || || || |||||| || ||| ||| Sbjct 31611728 GCAAAGATCAACCTCTGCTGGTCTGGAGGGATACCTTCTTTGTCTTGGATCTTTGCTTTG 31611669 Query 118662 ACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTT 118721 || | || | ||||| | ||| ||||| | ||| | || ||||| ||||| ||| Sbjct 31611668 ACATTCTCTATTGTGTCACTTGGCTCTACCTCCAAGGTGATGGTCTTGCCAGTCAGGGTT 31611609 Query 118722 TTTACAAAAATCTGCAT 118738 |||||||| |||||||| Sbjct 31611608 TTTACAAAGATCTGCAT 31611592 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601 || || ||||| || |||||||| || | | ||||| ||| || ||||| || ||| Sbjct 31802898 GTGGATTCTTTCTGGATGTTGTAGTCACAAAGGGTGCGGCCATCTTCCAGCTGCTTGCCA 31802839 Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661 || |||| | | |||||| || ||||| || || || |||||| || ||| ||| Sbjct 31802838 GCAAAGATCAACCTCTGCTGGTCTGGAGGGATACCTTCTTTGTCTTGGATCTTTCCTTTG 31802779 Query 118662 ACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTT 118721 || | || | ||||| | ||| ||||| | || | || ||||| ||||| ||| Sbjct 31802778 ACATTCTCTATTGTGTCACTTGGCTCTACCTCCAGAGTAATGGTCTTGCCAGTCAGGGTT 31802719 Query 118722 TTTACAAAAATCTGCAT 118738 |||||||| |||||||| Sbjct 31802718 TTTACAAAGATCTGCAT 31802702 Score = 91.5 bits (100), Expect = 1e-13 Identities = 139/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601 || ||||||||||| || |||||||| | | | || ||| || ||||| || || Sbjct 31802670 GTTGACTCTTTTTGTATATTGTAATCAGCAAGACTACGGCAATCTTCAAGCTGCTTGCCG 31802611 Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661 || |||| | | |||||| || || || || || || |||||| || ||| ||| Sbjct 31802610 GCAAAGATCAACCTCTGCTGGTCTGGGGGGATACCTTCTTTGTCTTGGATCTTTGCTTTG 31802551 Query 118662 ACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTT 118721 || | || | ||||| | ||| ||||| | ||| | || ||||| ||||| ||| Sbjct 31802550 ACATTCTCTATTGTGTCACTTGGCTCTACCTCCAGGGTGATGGTCTTGCCAGTCAGGGTT 31802491 Query 118722 TTTACAAAAATCTGCATG 118739 |||||||| ||||||||| Sbjct 31802490 TTTACAAAGATCTGCATG 31802473 Score = 89.7 bits (98), Expect = 4e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601 || || ||||| || |||||||| || | ||||| ||| || ||||| || || Sbjct 31611332 GTGGATTCTTTCTGGATGTTGTAGTCAGAAAGGGTGCGGCCATCTTCCAGCTGCTTGCCG 31611273 Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661 || |||| | | |||||| || ||||| || || || |||||| || ||| ||| Sbjct 31611272 GCAAAGATCAACCTCTGCTGGTCTGGAGGGATACCTTCTTTGTCTTGGATCTTTGCTTTG 31611213 Query 118662 ACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTT 118721 || | || | ||||| | ||| ||||| | ||| | || ||||| ||||| ||| Sbjct 31611212 ACATTCTCTATTGTGTCACTTGGCTCTACCTCCAGGGTGATGGTCTTGCCAGTCAGGGTT 31611153 Query 118722 TTTACAAAAATCTGCAT 118738 |||||||| |||||||| Sbjct 31611152 TTTACAAAGATCTGCAT 31611136 Score = 89.7 bits (98), Expect = 4e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601 || || || || || || ||||| || | | ||||| ||| || || || || || Sbjct 31803126 GTGGATTCCTTCTGGATATTGTAGTCACAAAGGGTGCGGCCATCTTCTAGTTGCTTGCCG 31803067 Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661 || |||| | | |||||| || ||||| || || || |||||| || ||| |||| Sbjct 31803066 GCAAAGATCAACCTCTGCTGGTCTGGAGGGATACCTTCTTTGTCTTGGATCTTTGATTTA 31803007 Query 118662 ACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTT 118721 || | || | |||||| | ||| ||||| | ||| | || ||||| ||||| ||| Sbjct 31803006 ACATTCTCTATGGTGTCACTTGGCTCTACCTCCAGGGTGATGGTCTTGCCAGTCAGGGTT 31802947 Query 118722 TTTACAAAAATCTGCAT 118738 |||||||| |||||||| Sbjct 31802946 TTTACAAAGATCTGCAT 31802930 Score = 89.7 bits (98), Expect = 4e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601 || || ||||| || || || || || | | ||||| ||| || ||||| || || Sbjct 31803354 GTTGATTCTTTCTGGATATTATAGTCACAAAGGGTGCGGCCATCTTCCAGCTGCTTGCCG 31803295 Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661 || |||| | | |||||| || || || || || || |||||| || ||| |||| Sbjct 31803294 GCAAAGATCAACCTCTGCTGGTCTGGGGGGATACCTTCTTTGTCTTGGATCTTTGATTTA 31803235 Query 118662 ACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTT 118721 || | || | |||||| | ||| ||||| | ||| | || ||||| ||||| ||| Sbjct 31803234 ACATTCTCAATGGTGTCACTTGGCTCTACCTCCAGGGTGATGGTCTTGCCAGTCAGGGTT 31803175 Query 118722 TTTACAAAAATCTGCAT 118738 |||||||| |||||||| Sbjct 31803174 TTTACAAAGATCTGCAT 31803158 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433794329984824