Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xenopus_20tropicalis_20[refseq_20GCF_5F000004195.3_202016-07-13] 6,822 sequences; 1,440,398,454 total letters Query= NC_002188.1 Length=288539 Score E Sequences producing significant alignments: (Bits) Value seq5 132 9e-26 seq1086 104 4e-17 >seq5 Length=146437384 Score = 132 bits (146), Expect = 9e-26 Identities = 135/175 (77%), Gaps = 1/175 (1%) Strand=Plus/Minus Query 51881 TTAGGATAGCCAGAGCATTATGGTTGTACTATATATCCAAAGGGATAGAATACTTGGATA 51940 ||||| | ||| ||| | |||| ||||||| | || |||||| | ||||| || || | Sbjct 79546842 TTAGG-TGGCCTCAGCTCTCTGGTGGTACTATGTTTCAAAAGGGGTGGAATATTTTGACA 79546784 Query 51941 CGGTATTTTTCATACTTAGGAAAAAATTTAATCAGGTTAGTTTTCTACACGTATATCATC 52000 | ||||||||||||||||| |||||||| || || |||||||||| || |||||||| | Sbjct 79546783 CAGTATTTTTCATACTTAGAAAAAAATTCAACCAAATTAGTTTTCTGCATGTATATCACC 79546724 Query 52001 ATTTTACTATGTTTACTCTAGGATGGATAGGTATTAAATGGTTTGCTGGAGGTCA 52055 | | || ||||| || || | ||||| || || |||||| |||| ||||| || Sbjct 79546723 ACTGCACAATGTTCACACTCTGGTGGATCGGAATCAAATGGGTTGCCGGAGGACA 79546669 Score = 102 bits (112), Expect = 2e-16 Identities = 104/133 (78%), Gaps = 2/133 (2%) Strand=Plus/Minus Query 52057 GCATTTTTTGGAGCTCAGCTAAATTCTTTTATCCATGTTATTATGTACACTTATTATGGT 52116 |||||||||||||| || | ||| | | ||||||||| | |||||| |||||||| Sbjct 79544649 GCATTTTTTGGAGCGCACATGAATGCACTGATCCATGTTGTGATGTACTTATATTATGGG 79544590 Query 52117 ATGGCCGCTTGTGGTCC-TATGTTCAGAAAGTATCTATGGTGGAAACGTTATCTTACTAT 52175 |||| || ||||| || || | ||| |||||| ||||||||||||| ||||| || || Sbjct 79544589 TTGGCTGCCTGTGGACCACATCTACAG-AAGTATTTATGGTGGAAACGATATCTGACAAT 79544531 Query 52176 AATGCAGTTGGTA 52188 | ||||| ||||| Sbjct 79544530 ATTGCAGCTGGTA 79544518 >seq1086 Length=14221 Score = 104 bits (114), Expect = 4e-17 Identities = 98/125 (78%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 51931 TACTTGGATACGGTATTTTTCATACTTAGGAAAAAATTTAATCAGGTTAGTTTTCTACAC 51990 || || || || ||||||||||||||||| |||||||| || || |||||||||| || Sbjct 715 TATTTTGACACAGTATTTTTCATACTTAGAAAAAAATTCAACCAAATTAGTTTTCTGCAT 656 Query 51991 GTATATCATCATTTTACTATGTTTACTCTAGGATGGATAGGTATTAAATGGTTTGCTGGA 52050 |||||||| || | || ||||| || || | ||||| || || |||||| |||| ||| Sbjct 655 GTATATCACCACTGCACAATGTTCACACTCTGGTGGATCGGAATCAAATGGGTTGCCGGA 596 Query 52051 GGTCA 52055 || || Sbjct 595 GGACA 591 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 923118074392880