Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xenopus_20tropicalis_20[refseq_20GCF_5F000004195.3_202016-07-13] 6,822 sequences; 1,440,398,454 total letters Query= NC_002593.1 Length=100999 Score E Sequences producing significant alignments: (Bits) Value seq2 100 2e-16 seq1 87.8 1e-12 >seq2 Length=170201513 Score = 100 bits (110), Expect = 2e-16 Identities = 143/195 (73%), Gaps = 6/195 (3%) Strand=Plus/Minus Query 34198 TTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAA 34257 ||||||||| ||||||||||| || || ||| | || |||| ||||||||| || || Sbjct 31611327 TTCTTTCTGGATGTTGTAGTCAGAAAGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAA 31611268 Query 34258 AATGAGCCGCTGCTGGTC--GACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTT-AG 34314 || | || ||||||||| || || || || || ||||| ||| |||||||| | Sbjct 31611267 GATCAACCTCTGCTGGTCTGGAGGGATAC-CT-TCTTTGTCTTGGATC-TTTGCTTTGAC 31611211 Query 34315 ATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTT 34374 || |||| | || | | || || |||| |||||||| ||||| || || ||||| Sbjct 31611210 ATTCTCTATTGTGTCACTTGGCTCTACCTCCAGGGTGATGGTCTTGCCAGTCAGGGTTTT 31611151 Query 34375 CACAAAGATCTGCAT 34389 |||||||||||||| Sbjct 31611150 TACAAAGATCTGCAT 31611136 Score = 98.7 bits (108), Expect = 6e-16 Identities = 139/193 (72%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 34198 TTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAA 34257 ||||||||| || || ||||| || || ||| | || |||| ||||||||| || || Sbjct 31610871 TTCTTTCTGGATATTATAGTCAGAAAGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAA 31610812 Query 34258 AATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTT-AGAT 34316 || | || ||||||||| ||| | | || ||||| |||||| ||||| | || Sbjct 31610811 GATCAACCTCTGCTGGTCTGGGGGGATACCTTCTTTGTCTTGGATCTTT-GCTTTGACAT 31610753 Query 34317 CGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCA 34376 |||| | || | | || || |||| || ||||||||||| || || ||||||| Sbjct 31610752 TCTCTATTGTGTCACTTGGCTCAACTTCCAAGGTAATGGTTTTGCCAGTCAGGGTTTTCA 31610693 Query 34377 CAAAGATCTGCAT 34389 ||||||||||||| Sbjct 31610692 CAAAGATCTGCAT 31610680 Score = 96.9 bits (106), Expect = 2e-15 Identities = 142/195 (73%), Gaps = 6/195 (3%) Strand=Plus/Minus Query 34198 TTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAA 34257 |||||| || ||||||||||| || || ||| | || |||| ||||||||| || || Sbjct 31611783 TTCTTTTTGGATGTTGTAGTCAGAAAGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAA 31611724 Query 34258 AATGAGCCGCTGCTGGTC--GACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTT-AG 34314 || | || ||||||||| || || || || || ||||| ||| |||||||| | Sbjct 31611723 GATCAACCTCTGCTGGTCTGGAGGGATAC-CT-TCTTTGTCTTGGATC-TTTGCTTTGAC 31611667 Query 34315 ATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTT 34374 || |||| | || | | || || |||| |||||||| ||||| || || ||||| Sbjct 31611666 ATTCTCTATTGTGTCACTTGGCTCTACCTCCAAGGTGATGGTCTTGCCAGTCAGGGTTTT 31611607 Query 34375 CACAAAGATCTGCAT 34389 |||||||||||||| Sbjct 31611606 TACAAAGATCTGCAT 31611592 Score = 91.5 bits (100), Expect = 1e-13 Identities = 140/195 (72%), Gaps = 6/195 (3%) Strand=Plus/Minus Query 34198 TTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAA 34257 ||||||||| || || ||||| || || ||| | || |||| ||||||||| || || Sbjct 31611555 TTCTTTCTGGATATTATAGTCAGAAAGTGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAA 31611496 Query 34258 AATGAGCCGCTGCTGGTC--GACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTT-AG 34314 || | || ||||||||| || || || ||| ||||| |||||| ||||| | Sbjct 31611495 GATCAACCTCTGCTGGTCTGGAGGGATACCTTCT--TTGTCTTGGATCTTT-GCTTTGAC 31611439 Query 34315 ATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTT 34374 || |||| | || | | || || |||| |||||||| ||||| || || ||||| Sbjct 31611438 ATTCTCTATTGTGTCACTTGGCTCTACCTCCAGGGTGATGGTCTTGCCAGTCAGGGTTTT 31611379 Query 34375 CACAAAGATCTGCAT 34389 |||||||||||||| Sbjct 31611378 TACAAAGATCTGCAT 31611364 Score = 87.8 bits (96), Expect = 1e-12 Identities = 139/195 (71%), Gaps = 6/195 (3%) Strand=Plus/Minus Query 34198 TTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAA 34257 ||||||||| || || ||||| || || || | || |||| ||||||||| || || Sbjct 31611099 TTCTTTCTGGATATTATAGTCAGAAAGTGTGCGACCATCTTCCAGCTGCTTGCCGGCAAA 31611040 Query 34258 AATGAGCCGCTGCTGGTC--GACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTT-AG 34314 || | || ||||||||| || || || ||| ||||| |||||| ||||| | Sbjct 31611039 GATCAACCTCTGCTGGTCTGGAGGGATACCTTCT--TTGTCTTGGATCTTT-GCTTTGAC 31610983 Query 34315 ATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTT 34374 || |||| | || | | || || |||| |||||||| ||||| || || ||||| Sbjct 31610982 ATTCTCTATTGTGTCACTTGGCTCTACCTCCAGGGTGATGGTCTTGCCAGTCAGGGTTTT 31610923 Query 34375 CACAAAGATCTGCAT 34389 |||||||||||||| Sbjct 31610922 TACAAAGATCTGCAT 31610908 Score = 87.8 bits (96), Expect = 1e-12 Identities = 138/194 (71%), Gaps = 4/194 (2%) Strand=Plus/Minus Query 34198 TTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAA 34257 ||||||||| ||||||||||| | || ||| | || |||| ||||||||| || || Sbjct 31802893 TTCTTTCTGGATGTTGTAGTCACAAAGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAA 31802834 Query 34258 AATGAGCCGCTGCTGGTC--GACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGA 34315 || | || ||||||||| || || || || || ||||| |||||| || | | Sbjct 31802833 GATCAACCTCTGCTGGTCTGGAGGGATAC-CT-TCTTTGTCTTGGATCTTTCCTTTGACA 31802776 Query 34316 TCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTC 34375 | |||| | || | | || || |||| || ||||| ||||| || || ||||| Sbjct 31802775 TTCTCTATTGTGTCACTTGGCTCTACCTCCAGAGTAATGGTCTTGCCAGTCAGGGTTTTT 31802716 Query 34376 ACAAAGATCTGCAT 34389 |||||||||||||| Sbjct 31802715 ACAAAGATCTGCAT 31802702 Score = 82.4 bits (90), Expect = 5e-11 Identities = 135/192 (70%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 34199 TCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAA 34258 ||||| ||||| ||||| || | || |||| || || | ||||||||| || || Sbjct 31802664 TCTTTTTGTATATTGTAATCAGCAAGACTACGGCAATCTTCAAGCTGCTTGCCGGCAAAG 31802605 Query 34259 ATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTT-AGATC 34317 || | || ||||||||| ||| | | || ||||| |||||| ||||| | || Sbjct 31802604 ATCAACCTCTGCTGGTCTGGGGGGATACCTTCTTTGTCTTGGATCTTT-GCTTTGACATT 31802546 Query 34318 GGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCAC 34377 |||| | || | | || || |||| |||||||| ||||| || || ||||| || Sbjct 31802545 CTCTATTGTGTCACTTGGCTCTACCTCCAGGGTGATGGTCTTGCCAGTCAGGGTTTTTAC 31802486 Query 34378 AAAGATCTGCAT 34389 |||||||||||| Sbjct 31802485 AAAGATCTGCAT 31802474 Score = 82.4 bits (90), Expect = 5e-11 Identities = 156/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 34160 AATCCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCG 34219 || || || | ||| | || || || || | ||| ||||||||| || || ||||| Sbjct 31803387 AAGCCACCTCTCAGACGAAGGACAAGATGCAGAGTTGATTCTTTCTGGATATTATAGTCA 31803328 Query 34220 GACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACG 34279 | || ||| | || |||| ||||||||| || || || | || ||||||||| | Sbjct 31803327 CAAAGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATCAACCTCTGCTGGTCTGGG 31803268 Query 34280 GGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCG 34339 || | | || ||||| |||||| || | || | || | || | | || Sbjct 31803267 GGGATACCTTCTTTGTCTTGGATCTTTGATTTAACATTCTCAATGGTGTCACTTGGCTCT 31803208 Query 34340 ACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || |||| |||||||| ||||| || || ||||| |||||||||||||| Sbjct 31803207 ACCTCCAGGGTGATGGTCTTGCCAGTCAGGGTTTTTACAAAGATCTGCAT 31803158 >seq1 Length=194866763 Score = 87.8 bits (96), Expect = 1e-12 Identities = 135/193 (70%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 34198 TTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAA 34257 |||||| || ||||||||||| || || || | || |||| ||||||||| || || Sbjct 151539273 TTCTTTTTGAATGTTGTAGTCAGAAAGAGTGCGACCATCTTCCAGCTGCTTGCCAGCAAA 151539214 Query 34258 AATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATC 34317 ||| | | ||||||||| ||| | || |||||||| || ||| ||||| || Sbjct 151539213 AATCAATCTCTGCTGGTCAGGGGGAATGCCTTCCTTGTCTTGGATTTTTGCCTTTACATT 151539154 Query 34318 GGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCAC 34377 | || | ||| | | || || || | || ||||| || || || || || ||||| Sbjct 151539153 CTCAATAGTATCACTTGGCTCAACCTCAAGGGTAATGGTCTTCCCAGTCAGGGTCTTCAC 151539094 Query 34378 AAAGATCTGCATC 34390 ||| ||||||||| Sbjct 151539093 AAATATCTGCATC 151539081 Score = 87.8 bits (96), Expect = 1e-12 Identities = 147/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 || |||||||| | || ||||||||| |||||||| || || || ||| | || Sbjct 151539749 AGGACCAGGTGCAGGGTGGATTCTTTCTGAATGTTGTAATCAGAGAGAGTGCGGCCATCT 151539690 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297 |||| |||||||||||| || || | || ||||||||| ||| | || ||||| || Sbjct 151539689 TCCAGCTGCTTGCCTGCAAAGATCAACCTCTGCTGGTCAGGGGGAATGCCTTCCTTATCT 151539630 Query 34298 GCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTT 34357 || ||| ||||| || | || | || | | || || || | || ||||| Sbjct 151539629 TGGATTTTTGCCTTTACATTCTCAATTGTGTCACTGGGCTCAACTTCAAGAGTAATGGTC 151539570 Query 34358 TTGCCGGTGAGAGTTTTCACAAAGATCTGCATC 34390 || || || || || || ||||| ||||||||| Sbjct 151539569 TTCCCAGTCAGGGTCTTGACAAAAATCTGCATC 151539537 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 323045138784320