Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xenopus_20tropicalis_20[refseq_20GCF_5F000004195.3_202016-07-13] 6,822 sequences; 1,440,398,454 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq3 105 6e-18 seq5 96.9 3e-15 >seq3 Length=137218701 Score = 105 bits (116), Expect = 6e-18 Identities = 139/191 (73%), Gaps = 4/191 (2%) Strand=Plus/Minus Query 136084 GACGTTTATTTGTTTAACATAGCTATGTCGGATCTGATGTTAGTTTTTTCATTTCCTTTT 136143 || |||||| | |||||||| || | || || || |||| ||| | ||| |||| ||| Sbjct 56710222 GATGTTTATCTCTTTAACATGGCAGTCTCAGACCTATTGTTTGTTGTCTCACTTCCATTT 56710163 Query 136144 ATTA--TACATAATGATTTAAATGAATGGATATTTGGAGAGTTTATGTGTAAGTTGGTAT 136201 ||| |||| ||| || ||||||||||||||||||| | | |||||||| | ||| Sbjct 56710162 ATTGCCTACACAATCAT--AAATGAATGGATATTTGGAAATATAATGTGTAAAATATTAT 56710105 Query 136202 TGGGAGTATATTTTGTAGGATTTTTTAGCAACATGTTTTTTGTAACGTTAATAAGCATAG 136261 |||||||||| || |||||||||| || || ||| ||||| | || || ||| Sbjct 56710104 CTACCATATATTTTGTTGGTTTTTTTAGCAGTATATTCTTTATAACGGTTATGAGTGTAG 56710045 Query 136262 ACAGATATATT 136272 || | ||| || Sbjct 56710044 ACCGCTATTTT 56710034 >seq5 Length=146437384 Score = 96.9 bits (106), Expect = 3e-15 Identities = 103/136 (76%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 16257 CTTCGTCCCTACTTATTAACTCGTTTGAAAATGTAAGACCTGGCATTAGTCCTCGTTTTT 16316 |||| || || || || | || || || || || || || ||||| || || ||||| | Sbjct 134143405 CTTCATCTCTGCTAATAAGTTCATTAGAGAAAGTGAGTCCAGGCATCAGCCCCCGTTTCT 134143346 Query 16317 TAATCCAAAATATAGCGGCAAATGAACCAGAAAAGAATATACCTTCAACTGCGGCAAATG 16376 | | ||| || || | |||||||||||||| ||||| || |||||||| || ||||||| Sbjct 134143345 TTAGCCAGAAAATTGATGCAAATGAACCAGAGAAGAAAATCCCTTCAACAGCAGCAAATG 134143286 Query 16377 CAACCAATCGCTCACC 16392 | |||| ||| ||||| Sbjct 134143285 CCACCACTCGTTCACC 134143270 Score = 91.5 bits (100), Expect = 1e-13 Identities = 89/115 (77%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 16488 TTTCTTTGCTATCTAAAATATAAGTATCTATTAGTAAACTATACATTTCTGAATGAATAT 16547 |||| ||| |||| ||| || || || || || | || ||||| || |||||||||| Sbjct 134154643 TTTCCTTGGGATCTTTAATGTAGGTGTCGATAAGAAGGCTGTACATCTCAGAATGAATAT 134154584 Query 16548 TCTCCATTGCTATCTGAAAACCATAAAAGCATCTAGCTTCGGATATTTGTACTTC 16602 |||||||||| || || || ||||||||||| | ||| |||| || ||| ||||| Sbjct 134154583 TCTCCATTGCAATTTGGAAGCCATAAAAGCAGCGAGCCTCGGTTACTTGCACTTC 134154529 Score = 82.4 bits (90), Expect = 7e-11 Identities = 87/115 (76%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 16488 TTTCTTTGCTATCTAAAATATAAGTATCTATTAGTAAACTATACATTTCTGAATGAATAT 16547 |||||||| |||| || || || || || || | || ||||| || |||||||||| Sbjct 134142986 TTTCTTTGGGATCTTTGATGTAGGTGTCAATAAGAAGGCTGTACATCTCAGAATGAATAT 134142927 Query 16548 TCTCCATTGCTATCTGAAAACCATAAAAGCATCTAGCTTCGGATATTTGTACTTC 16602 |||||||||| || || || ||||||||||| | ||| || | | ||| ||||| Sbjct 134142926 TCTCCATTGCAATTTGGAAGCCATAAAAGCAGCGAGCCTCTGTAACTTGCACTTC 134142872 Score = 82.4 bits (90), Expect = 7e-11 Identities = 77/98 (79%), Gaps = 0/98 (0%) Strand=Plus/Minus Query 15926 TTTGACATAACTGACATTTTTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTT 15985 || ||||| || ||| || || ||||| |||| |||| ||||||||||| || ||| Sbjct 134156608 TTGGACATGACACCCATCTTCTGGTATTCGGCAACTTTCTTCTCAAAGAAATTAGTCTTT 134156549 Query 15986 CCTTCTAATGAAATATTTTCCATAAAATCAAAAGGATT 16023 ||||| || || || || |||||||||||||| ||||| Sbjct 134156548 CCTTCCAAGGATATGTTCTCCATAAAATCAAATGGATT 134156511 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462472559289200