Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xenopus_20tropicalis_20[refseq_20GCF_5F000004195.3_202016-07-13] 6,822 sequences; 1,440,398,454 total letters Query= NC_002665.1 Length=108873 Score E Sequences producing significant alignments: (Bits) Value seq3 311 6e-80 seq1 100 2e-16 >seq3 Length=137218701 Score = 311 bits (344), Expect = 6e-80 Identities = 606/886 (68%), Gaps = 17/886 (2%) Strand=Plus/Minus Query 107682 CAGTTCCCACTGAGTAAAGAAGAGCTAGACTTCCCCATTGCCTACTCGATGGTGGTCCAT 107741 || |||||| |||| ||||||||| ||||||| |||||||| || ||||| | ||| Sbjct 86777303 CATTTCCCA-TGAGCAAAGAAGAGGAGAACTTCCCTATTGCCTATTCTATGGTTATACAT 86777245 Query 107742 GAGAAGATTGAAAACTTTGAACGGCTGCTGCGAGCCGTGTATGCCCCTCAGAACATATAC 107801 || |||||||| | || ||| |||| ||| |||| | ||||||||||||||||| ||| Sbjct 86777244 GAAAAGATTGATATGTTCGAAAGGCTACTGAGAGCAATTTATGCCCCTCAGAACATTTAC 86777185 Query 107802 TGTGTCCACGTGGATGTGAAGTCCCCAGAGACTTTCAAAGAGGCGGTCAAGGCCATTATT 107861 ||||| || ||||||| ||||| || | || || ||||| || || ||||||| Sbjct 86777184 TGTGTTCATGTGGATGAAAAGTCTCCTGCTGTATTTAAGGAGGCAGTGAATGCCATTACC 86777125 Query 107862 TCCTGCTTCCCCAATGTCTTCATGGCCAGTAAGTTGGTCCCGGTGGTTTATGCCTCCTGG 107921 || ||||| ||||| || || || ||||| ||| ||||| ||||| | ||| Sbjct 86777124 TCTTGCTTTGATAATGTATTTATTGCATCCAAGTTAGTCAAAGTGGTCTATGCTGCTTGG 86777065 Query 107922 TCCAGAGTGCAAGCTGACCTGAACTGTATGGAAGACTTGCTCCAGAGCTCAGTGCCATGG 107981 | || || ||||||||||| ||||| |||||||| || || |||||| ||| | ||| Sbjct 86777064 CCAAGGGTTCAAGCTGACCTAAACTGCATGGAAGATTTACTGCAGAGCAAAGTACTGTGG 86777005 Query 107982 AAGTACTTACTGAATACATGCGGGACAGACTTCCCCATAAAGACCAATGCCGAGATGGTC 108041 |||||| | || ||||| || || ||||||||||| ||||||| ||||| || || || Sbjct 86777004 AAGTACCTTCTAAATACTTGTGGCACAGACTTCCCATTAAAGACTAATGCTGAAATTGTG 86776945 Query 108042 CTGGCCCTCAAGATGTTGAAGGGTAAGAACAGTATGGAGTCTGAGGTACCTTCTGAGTCC 108101 ||||||| || || || || || ||||||||||||||| ||| || || Sbjct 86776944 AGAACCCTCAAATCATTAAATGGAAAAAATAGTATGGAGTCTGAGAAACCATCATCATCA 86776885 Query 108102 aaaaaaaaTCGCTGGAAATACCGCTATGAGGTGACAGACACACTGTACCCTA-CCAGCAA 108160 ||||| | |||||| ||| | | ||| ||| || | || || | | |||| | Sbjct 86776884 AAAAAGACACGCTGGGAATTTCATTTTGAAGTG--GGAGATTCTATATCAAAGACAGCTA 86776827 Query 108161 --GATGAAGGACCCTCCCCC---TGATAATTTACCCATGTTCACAGGGAATGCCTATTTT 108215 || ||| ||| || || ||| | | || ||||| ||||| || || ||| || Sbjct 86776826 TTGA-GAAATCCCCACCGCCGATTGACAGT---CCAATGTTTACAGGCAACGCGTATATT 86776771 Query 108216 GTGGCCTCTCGAGCCTTTGTCCAACATGTCTTAGACAACCCTAAATCCCAAAGACTGGTT 108275 |||| | ||| || || ||||| | || |||| || || | | | || | Sbjct 86776770 GTGGTTTGCCGAAATTTCGTTGAACATATTTTTAACAATCCACAAGCTCTGACCTTGATA 86776711 Query 108276 GAATGGGTCAAAGACACCTATAGCCCCGACGAACACCTCTGGGCCACCCTTCAGCGTGCT 108335 || |||||||| || || |||||||| || ||||| | ||||| || ||| | | Sbjct 86776710 GAGTGGGTCAAGGATACATATAGCCCAGATGAACATTTATGGGCTACTCTTAATAGAATG 86776651 Query 108336 CCGTGGATGCCTGGCTCTGTTCCTAGCCACCCCAAGTATCACATCTCAGACATGACTGCC 108395 || | | || || ||| |||| | | || ||| | | ||||| |||| ||| Sbjct 86776650 CCAGGAGTACCAGGGTCTTCTCCTTACAGCGATAAATATGAAAAATCAGATATGAATGCA 86776591 Query 108396 ATCGCCAGGCTCGTCAAGTGGCAGTACCACGA--GGGAGATGTCAGCATGGGGGCGCCTT 108453 | ||||| | || |||||| |||| || |||| || || | ||| || |||| Sbjct 86776590 GTGGCCAGAATGGTAAAGTGGGGGTACATGGAAGGGGACATTGCA--AAGGGAGCACCTT 86776533 Query 108454 ATGCACCCTGCTCTGGAATCCATCGGAGGGCCATCTGCATTTACGGGGCCGGGGACCTGT 108513 | |||| ||| | || | || ||||| | || || | || || | ||||| || | Sbjct 86776532 ACCCACCATGCACAGGTACACACAGGAGGTCAATTTGTGTGTATGGTACTGGGGATCTAT 86776473 Query 108514 ACTGGATTCTCCAGAACCATCACCTCTTGGCAAACAAGTTTGACCC 108559 | ||| | || | | ||||| | ||||| ||||||||||| || Sbjct 86776472 ATTGGTTGCTGGAACAGCATCATGTGTTGGCCAACAAGTTTGATCC 86776427 Score = 250 bits (276), Expect = 2e-61 Identities = 321/440 (73%), Gaps = 2/440 (0%) Strand=Plus/Minus Query 107692 TGAGTAAAGAAGAGCTAGACTTCCCCATTGCCTACTCGATGGTGGTCCATGAGAAGATTG 107751 |||||||||| || | ||| || ||||| || ||||| |||||| |||| || || |||| Sbjct 86806106 TGAGTAAAGAGGAACAAGATTTTCCCATCGCTTACTCTATGGTGATCCACGACAATATTG 86806047 Query 107752 AAAACTTTGAACGGCTGCTGCGAGCCGTGTATGCCCCTCAGAACATATACTGTGTCCACG 107811 | | |||||| | || ||| |||| | || |||| || || || || ||||| || Sbjct 86806046 AGATGTTTGAAAGACTTCTGAGAGCTATTTACACCCCGCATAATATTTATTGTGTTCATA 86805987 Query 107812 TGGATGTGAAGTCCCCAGAGA-CTTTCAAAGAGGCGGTCAAGGCCATTATTTCCTGCTTC 107870 ||||| |||||||||||||| |||||| || | || | || || | || ||||| Sbjct 86805986 TGGATAAGAAGTCCCCAGAGAGCTTTCATCAAG-CAGTGAGAGCTATCACGTCTTGCTTT 86805928 Query 107871 CCCAATGTCTTCATGGCCAGTAAGTTGGTCCCGGTGGTTTATGCCTCCTGGTCCAGAGTG 107930 |||||| || |||| ||| ||||| ||||| ||||| || ||| ||||| Sbjct 86805927 GGCAATGTGTTTGTGGCATCAAAGCTGGTCAACGTGGTCTATGCATCATGGCGGAGAGTT 86805868 Query 107931 CAAGCTGACCTGAACTGTATGGAAGACTTGCTCCAGAGCTCAGTGCCATGGAAGTACTTA 107990 ||||| || || ||||| |||||||||||||| |||||| ||||| ||||| || | Sbjct 86805867 CAAGCAGATCTTAACTGCATGGAAGACTTGCTACAGAGCAAGGTGCCGTGGAAATATCTC 86805808 Query 107991 CTGAATACATGCGGGACAGACTTCCCCATAAAGACCAATGCCGAGATGGTCCTGGCCCTC 108050 | |||||||| || || ||||| || |||||||| ||||| ||||||||| ||| || Sbjct 86805807 ATTAATACATGTGGAACTGACTTTCCAATAAAGACTAATGCTGAGATGGTCAAGGCTCTT 86805748 Query 108051 AAGATGTTGAAGGGTAAGAACAGTATGGAGTCTGAGGTACCTTCTGAGTCCaaaaaaaaT 108110 ||| || || ||| | |||||||||||||||||| | || | | |||||| | Sbjct 86805747 AAGTCTTTAAATGGTCACAACAGTATGGAGTCTGAGATTCCACCCAACCACAAAAAGAGA 86805688 Query 108111 CGCTGGAAATACCGCTATGA 108130 |||||| | || | || ||| Sbjct 86805687 CGCTGGGAGTATCACTTTGA 86805668 >seq1 Length=194866763 Score = 100 bits (110), Expect = 2e-16 Identities = 185/269 (69%), Gaps = 2/269 (1%) Strand=Plus/Plus Query 107684 GTTCCCACTGAGTAAAGAAGAGCTAGACTTCCCCATTGCCTACTCGATGGTGGTCCATGA 107743 || |||||| || |||||||| || ||||||||||| || || || |||||| || | Sbjct 119736187 GTACCCACTAAGCAAAGAAGAAAGGGAGTTCCCCATTGCATATTCAATAGTGGTCTATCA 119736246 Query 107744 GAAGATTGAAAACTTTGAACGGCTGCTGCGAGCCGTGTATGCCCCTCAGAACATATACTG 107803 | |||||| | | || |||| ||||| || | || | |||||||| ||||| Sbjct 119736247 TAGGATTGACATGCTAGAGAGGCTTCTGCGCTCCATATACACTCCTCAGAATTACTACTG 119736306 Query 107804 TGTCCACGTGGATGTGAAGTC-CCCAGAGACTTTCAAAGAGGCGGTCAAGGCCATTATTT 107862 | || ||||| ||| || | | | |||| || | || || |||||||||| || Sbjct 119736307 CATTCATGTGGACAAGAAATCTTCTACATCTTTTCTAA-ATGCAGTGAAGGCCATTACTT 119736365 Query 107863 CCTGCTTCCCCAATGTCTTCATGGCCAGTAAGTTGGTCCCGGTGGTTTATGCCTCCTGGT 107922 | || || ||||| ||||| || || |||| | ||||| ||||| || ||| Sbjct 119736366 CTTGTTTTGAAAATGTGTTCATTGCTAGCCAGTTAGAAAATGTGGTGTATGCATCATGGG 119736425 Query 107923 CCAGAGTGCAAGCTGACCTGAACTGTATG 107951 | || ||||| || || || || |||||| Sbjct 119736426 CTAGGGTGCAGGCCGATCTAAATTGTATG 119736454 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 348239843843628