Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xenopus_20tropicalis_20[refseq_20GCF_5F000004195.3_202016-07-13] 6,822 sequences; 1,440,398,454 total letters Query= NC_003027.1 Length=150773 Score E Sequences producing significant alignments: (Bits) Value seq5 102 8e-17 seq6 96.9 3e-15 >seq5 Length=146437384 Score = 102 bits (112), Expect = 8e-17 Identities = 103/134 (77%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 14228 TCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttttt 14287 |||||||| ||||||||||| || || || || | ||| ||||||| || ||||| ||| Sbjct 134143403 TCATCTCTGCTAATAAGTTCATTAGAGAAAGTGAGTCCAGGCATCAGCCCCCGTTTCTTT 134143344 Query 14288 AACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACGCT 14347 | ||| || |||| || ||||| || || ||||| || || ||||| |||||||| || Sbjct 134143343 AGCCAGAAAATTGATGCAAATGAACCAGAGAAGAAAATCCCTTCAACAGCAGCAAATGCC 134143284 Query 14348 ATTAATCGTTCTCC 14361 | | |||||| || Sbjct 134143283 ACCACTCGTTCACC 134143270 Score = 87.8 bits (96), Expect = 2e-12 Identities = 78/98 (80%), Gaps = 0/98 (0%) Strand=Plus/Minus Query 13895 TTAGAAATAACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTA 13954 || || || || ||||| || || ||||| |||| | || |||||||| ||||| || Sbjct 134156608 TTGGACATGACACCCATCTTCTGGTATTCGGCAACTTTCTTCTCAAAGAAATTAGTCTTT 134156549 Query 13955 CCTTCCAGTGATATATTTTCCATAAAATCAAATGGATT 13992 ||||||| ||||| || |||||||||||||||||||| Sbjct 134156548 CCTTCCAAGGATATGTTCTCCATAAAATCAAATGGATT 134156511 Score = 82.4 bits (90), Expect = 7e-11 Identities = 102/140 (73%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 13856 TAAAAATCAACATCTAACGAAAAAACATTATCGTCTTTGTTAGAAATAACGCCCATTTTT 13915 ||||| ||| |||||| | ||| || || | | || || || || ||||| || Sbjct 134144663 TAAAAGTCAGCATCTAGTGTGAAAGTGTTGTCTTTTGGCTTTGACATGACACCCATCTTC 134144604 Query 13916 TGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTTCC 13975 || ||||| | |||| | || || ||||||||||| || ||||||| || || || ||| Sbjct 134144603 TGGTATTCGCCAACTTTCTTCTCGAAGAAGTTAGTCTTTCCTTCCAAAGAAATGTTCTCC 134144544 Query 13976 ATAAAATCAAATGGATTTGT 13995 || || ||||||||||| || Sbjct 134144543 ATGAAGTCAAATGGATTAGT 134144524 >seq6 Length=135134832 Score = 96.9 bits (106), Expect = 3e-15 Identities = 94/121 (78%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 14226 CCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttt 14285 ||||||||||||| || || || || || || || | ||| ||||| | ||| | ||| | Sbjct 118784199 CCTCATCTCTACTGATCAGCTCATTGGAGAAGGTGAGTCCAGGCATGAGTCCCCTTTTCT 118784140 Query 14286 ttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACG 14345 ||| ||| || || ||||| || ||||| || ||||||||||| || |||||||| || | Sbjct 118784139 TTAGCCAGAAAATAGCAGCAAAGGATCCAGAGAAGAATATTCCTTCTACTGCAGCGAATG 118784080 Query 14346 C 14346 | Sbjct 118784079 C 118784079 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 482304467978960