Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xenopus_20tropicalis_20[refseq_20GCF_5F000004195.3_202016-07-13] 6,822 sequences; 1,440,398,454 total letters Query= NC_003083.1 Length=118584 Score E Sequences producing significant alignments: (Bits) Value seq1 100 2e-16 >seq1 Length=194866763 Score = 100 bits (110), Expect = 2e-16 Identities = 151/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 18114 AGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCT 18173 || |||| || || || ||||| ||||| ||||| ||||| | | ||| | |||| Sbjct 151539065 AGAACCAAATGCAGAGTGGATTCCTTTTGGATGTTATAGTCTGATAAGGTTCGGCCATCT 151539006 Query 18174 TCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCG 18233 |||| |||||||| ||| |||| | ||||||||||| || | |||||| ||||| Sbjct 151539005 TCCAGCTGTTTGCCAGCAAAGATCAACCTTTGTTGATCTGGAGGAATGCCTTCTTTATCC 151538946 Query 18234 GCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTT 18293 |||| ||| || | | ||| |||||||| ||||| ||| | |||||| | Sbjct 151538945 TGTATTTTAGCCTTCACATTTTCAATAGTGTCACTTGGCTCAACTTCTAGTGTGATGGTC 151538886 Query 18294 TTGCCGGTCAATGTTTTTACAAAAATTTGCATTTT 18328 || || || | ||||| ||||| || ||||| || Sbjct 151538885 TTCCCAGTGAGCGTTTTCACAAATATCTGCATGTT 151538851 Score = 100 bits (110), Expect = 2e-16 Identities = 150/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 18113 AAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATC 18172 ||| |||| ||| || || |||||||| ||||||||||| || | | || | ||| Sbjct 151539750 AAGGACCAGGTGCAGGGTGGATTCTTTCTGAATGTTGTAATCAGAGAGAGTGCGGCCATC 151539691 Query 18173 TTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATC 18232 ||||| || ||||| ||| |||| | || || || || ||| | |||||||||||| Sbjct 151539690 TTCCAGCTGCTTGCCTGCAAAGATCAACCTCTGCTGGTCAGGGGGAATGCCTTCCTTATC 151539631 Query 18233 GGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCT 18292 |||| | ||| || | ||| ||||||| |||||| ||||| || ||| | Sbjct 151539630 TTGGATTTTTGCCTTTACATTCTCAATTGTGTCACTGGGCTCAACTTCAAGAGTAATGGT 151539571 Query 18293 TTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 || || |||| || || |||||||| ||||| Sbjct 151539570 CTTCCCAGTCAGGGTCTTGACAAAAATCTGCAT 151539538 Score = 91.5 bits (100), Expect = 1e-13 Identities = 148/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 18113 AAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATC 18172 ||| || | ||| | || ||||||||||||||||||||||| | | || || ||| Sbjct 151539294 AAGAACTAAGTGCAAGGTGGATTCTTTTTGAATGTTGTAGTCAGAAAGAGTGCGACCATC 151539235 Query 18173 TTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATC 18232 ||||| || ||||| ||| | || | ||| || || || ||| | ||||||||| || Sbjct 151539234 TTCCAGCTGCTTGCCAGCAAAAATCAATCTCTGCTGGTCAGGGGGAATGCCTTCCTTGTC 151539175 Query 18233 GGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCT 18292 |||| | ||| || | ||| ||| |||| ||||| |||| ||| ||| | Sbjct 151539174 TTGGATTTTTGCCTTTACATTCTCAATAGTATCACTTGGCTCAACCTCAAGGGTAATGGT 151539115 Query 18293 TTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 || || |||| || || ||||| || ||||| Sbjct 151539114 CTTCCCAGTCAGGGTCTTCACAAATATCTGCAT 151539082 Score = 91.5 bits (100), Expect = 1e-13 Identities = 150/214 (70%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 18113 AAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATC 18172 ||| |||| ||| ||||| |||||||| ||||||||||| || | | ||| | ||| Sbjct 151539522 AAGAACCAAGTGCAGTGTGGATTCTTTCTGAATGTTGTAATCAGAGAGTGTGCGGCCATC 151539463 Query 18173 TTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATC 18232 ||||| || || || ||| |||| | ||| || || || || | ||||| || || Sbjct 151539462 TTCCAGCTGCTTTCCGGCAAAGATCAATCTCTGCTGGTCGGGAGGAATACCTTCTTTGTC 151539403 Query 18233 GGCAATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGC 18291 ||||| |||| || || | | ||| ||||||| || || |||| ||| || Sbjct 151539402 TTGAATTT-TTGCTTTTACATTTTCAATGGTGTCACTTGGTTCAACCTCAAGGGTTATTG 151539344 Query 18292 TTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 |||| || |||| || || ||||| |||||||| Sbjct 151539343 TTTTACCAGTCAGGGTCTTCACAAATATTTGCAT 151539310 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 379312460154390