Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xenopus_20tropicalis_20[refseq_20GCF_5F000004195.3_202016-07-13] 6,822 sequences; 1,440,398,454 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq5 114 1e-20 seq6 111 1e-19 seq106 91.5 1e-13 >seq5 Length=146437384 Score = 114 bits (126), Expect = 1e-20 Identities = 107/136 (79%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 11652 CTTCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGttttt 11711 |||| ||||| || || ||||||||||| || || | ||| ||||||| || ||||| | Sbjct 134143405 CTTCATCTCTGCTAATAAGTTCATTAGAGAAAGTGAGTCCAGGCATCAGCCCCCGTTTCT 134143346 Query 11712 ttATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATG 11771 ||| ||| || || | |||||||||||||| ||||| || || || ||||| ||||||| Sbjct 134143345 TTAGCCAGAAAATTGATGCAAATGAACCAGAGAAGAAAATCCCTTCAACAGCAGCAAATG 134143286 Query 11772 CTACTACTCTTTCTCC 11787 | || |||| ||| || Sbjct 134143285 CCACCACTCGTTCACC 134143270 Score = 98.7 bits (108), Expect = 9e-16 Identities = 96/124 (77%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 11652 CTTCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGttttt 11711 |||| ||||| || || ||||||||||| || || | ||| ||||||| || ||||| | Sbjct 134155217 CTTCATCTCTGCTGATAAGTTCATTAGAGAAAGTGAGTCCAGGCATCAGCCCCCGTTTCT 134155158 Query 11712 ttATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATG 11771 | | ||| ||||| | |||||||||||| || || || || || || ||||| ||||| | Sbjct 134155157 TCAGCCAGAATATGGAAGCAAATGAACCGGAGAAAAAGATCCCTTCAACAGCAGCAAAGG 134155098 Query 11772 CTAC 11775 | || Sbjct 134155097 CCAC 134155094 >seq6 Length=135134832 Score = 111 bits (122), Expect = 1e-19 Identities = 105/134 (78%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 11654 TCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGttttttt 11713 || |||||||| || || ||||| || || || | ||| ||||| | ||| | ||| ||| Sbjct 118784197 TCATCTCTACTGATCAGCTCATTGGAGAAGGTGAGTCCAGGCATGAGTCCCCTTTTCTTT 118784138 Query 11714 ATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATGCT 11773 | ||| || ||||||||||| || ||||| ||||||||||| || || || || ||||| Sbjct 118784137 AGCCAGAAAATAGCAGCAAAGGATCCAGAGAAGAATATTCCTTCTACTGCAGCGAATGCC 118784078 Query 11774 ACTACTCTTTCTCC 11787 || ||||| ||||| Sbjct 118784077 ACCACTCTCTCTCC 118784064 >seq106 Length=555726 Score = 91.5 bits (100), Expect = 1e-13 Identities = 86/110 (78%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 37138 ACCTGAAAATCTCCAGATAATACTCTTCTTGTATATATATTGCTAGTATATGGTTCAATG 37197 ||||| || || ||||| | ||||| | ||| ||||||||||| |||||||| |||||| Sbjct 351714 ACCTGGAACTCGCCAGACAGGACTCTGCGTGTGTATATATTGCTGGTATATGGCTCAATG 351655 Query 37198 GACTCATTATTACTTAATATTTGAGATGTAGATGCAGTAGGCATTGGTGC 37247 ||||||||||| | | ||||| | || || || || |||||||| || Sbjct 351654 GACTCATTATTGCCCAGGATTTGTGCAGTGGAAGCCGTGGGCATTGGAGC 351605 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468484846547680