Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xenopus_20tropicalis_20[refseq_20GCF_5F000004195.3_202016-07-13] 6,822 sequences; 1,440,398,454 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq106 113 6e-20 seq6 105 9e-18 seq3 95.1 2e-14 >seq106 Length=555726 Score = 113 bits (124), Expect = 6e-20 Identities = 128/172 (74%), Gaps = 0/172 (0%) Strand=Plus/Minus Query 66801 CTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTATAATG 66860 ||||||| ||| || ||||| ||||| | || || |||||||| | || || | |||| Sbjct 336128 CTAAATATTTTCTTGGTTTCCTTGTGCAAGTTAGAGACGGCTATCCGGGCAGCCAGAATG 336069 Query 66861 GCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCAAT 66920 |||||||| || || | ||| || ||||||||| | || ||||| | ||||||| | Sbjct 336068 GCATAATCTGGGTGCTTTGTGGTCAGGGTGGCTGCTGTCTCCGCTGCTAATGTGTCCAGT 336009 Query 66921 TCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTCATAGCTATTT 66972 |||| ||||| || |||||||| | || || || || ||||||| |||| Sbjct 336008 TCTATAGTTGTGACCCCATTATAAAGCCCCTGAATGACTTTCATAGTGATTT 335957 Score = 100 bits (110), Expect = 4e-16 Identities = 113/149 (76%), Gaps = 2/149 (1%) Strand=Plus/Minus Query 66060 ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA-AATAAATCTCTGGTTCTATG 66118 || ||||||||||||||||| || ||||| | || ||| || | ||| |||| ||| || Sbjct 345971 ACACGTTTCATAAAGAGATCTGGTATCCACATGGC-ATAGAACAGATCCCTGGCTCTCTG 345913 Query 66119 TTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCATAATGCCACGG 66178 ||||| ||||| || |||||||| || || ||||| | | | ||| || |||||||| Sbjct 345912 CTCCTCCTTTCCAGTGTTCTTTTTTAGGTCCAGGAATTCAAAGACATCGTAGTGCCACGG 345853 Query 66179 TTCCAAGTATATGGCCATAACTCCAGGCC 66207 |||| ||| ||||| | | ||||||| Sbjct 345852 CTCCAGGTAAATGGCAAATGCACCAGGCC 345824 Score = 95.1 bits (104), Expect = 2e-14 Identities = 105/140 (75%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 65179 CTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCA 65238 |||| || || || ||||||| ||||| || ||||| ||||| |||||||| || || | Sbjct 351716 CTACCTGGAACTCGCCAGACAGGACTCTGCGTGTGTATATATTGCTGGTATATGGCTCAA 351657 Query 65239 CAGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATA 65298 ||||||||||| |||| ||||| ||||| || || || ||||| || |||| | | Sbjct 351656 TGGACTCATTATTGCCCAGGATTTGTGCAGTGGAAGCCGTGGGCATTGGAGCCAGAAGCA 351597 Query 65299 AACTATTTCTAAGACCGTAT 65318 |||| || | | |||||| Sbjct 351596 AACTGTTCCGGACGCCGTAT 351577 Score = 87.8 bits (96), Expect = 2e-12 Identities = 98/131 (75%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 66456 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTG 66515 || || ||||| || | || |||||||||||||| |||||||||||||| | |||||| Sbjct 338670 GTACCAGCATTGAACAGTGTGGGAGAAGCGTGCGTGAACCATTTTTCAGACAACAGATTG 338611 Query 66516 TACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAAC 66575 || || || ||||| | ||| || || || ||| || || || | || | ||| | | Sbjct 338610 TAGGTTTCGATAGCGGCGTCAATGTCTGTTTTATGTATGCCAACGGATACCCTCATCAGC 338551 Query 66576 ATGTGCTGAGG 66586 |||||||| || Sbjct 338550 ATGTGCTGTGG 338540 >seq6 Length=135134832 Score = 105 bits (116), Expect = 9e-18 Identities = 105/136 (77%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 36180 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 36239 |||| |||||||| || | || ||||| || |||||||| ||||| || || | || | Sbjct 118784199 CCTCATCTCTACTGATCAGCTCATTGGAGAAGGTGAGTCCAGGCATGAGTCCCCTTTTCT 118784140 Query 36240 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 36299 | ||||| || || | ||||| |||||||| ||||| |||||||||||||| || || | Sbjct 118784139 TTAGCCAGAAAATAGCAGCAAAGGATCCAGAGAAGAATATTCCTTCTACTGCAGCGAATG 118784080 Query 36300 CAATAAGTCTCTCTCC 36315 | | | ||||||||| Sbjct 118784079 CCACCACTCTCTCTCC 118784064 >seq3 Length=137218701 Score = 95.1 bits (104), Expect = 2e-14 Identities = 104/138 (75%), Gaps = 4/138 (3%) Strand=Plus/Minus Query 9473 AAACAAT----CCTGCTCCAAGTTTACTGAAATCTCTCTTTGATTGTAGAGTATATGCAG 9528 ||||||| || ||||||| || ||||| ||||||||||| || | || |||| | Sbjct 47946866 AAACAATATACCCAGCTCCAAACTTGCTGAAGTCTCTCTTTGACTGAAACGTGAATGCTG 47946807 Query 9529 TCAGAGCAAGAAACACTGCAGTAGTCAGCATGAAAGCTTGCATAACGACATGCACATCAT 9588 |||| |||| ||||| || |||||||| || || ||||| | ||| ||| ||||||| Sbjct 47946806 TCAGGCCAAGGAACACAGCTGTAGTCAGTATAAAGGCTTGAAGAACTACAGCTACATCAT 47946747 Query 9589 AGAAAGTAACAACAGAGG 9606 |||| ||||| | | ||| Sbjct 47946746 AGAATGTAACTAGAAAGG 47946729 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658116674314480