Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xenopus_20tropicalis_20[refseq_20GCF_5F000004195.3_202016-07-13] 6,822 sequences; 1,440,398,454 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq106 125 1e-23 seq6 111 2e-19 seq5 95.1 2e-14 >seq106 Length=555726 Score = 125 bits (138), Expect = 1e-23 Identities = 131/172 (76%), Gaps = 0/172 (0%) Strand=Plus/Minus Query 80680 CTAAATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAAAATG 80739 ||||||| ||| || ||||||||||| | || || |||||||| | ||| || | |||| Sbjct 336128 CTAAATATTTTCTTGGTTTCCTTGTGCAAGTTAGAGACGGCTATCCGGGCAGCCAGAATG 336069 Query 80740 GCATAATCTGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCAAT 80799 ||||||||||| || | ||| || ||||||||| | || ||||| | ||||||| | Sbjct 336068 GCATAATCTGGGTGCTTTGTGGTCAGGGTGGCTGCTGTCTCCGCTGCTAATGTGTCCAGT 336009 Query 80800 TCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTCATAGCTATTT 80851 |||| ||||| || |||||||| | || || || || ||||||| |||| Sbjct 336008 TCTATAGTTGTGACCCCATTATAAAGCCCCTGAATGACTTTCATAGTGATTT 335957 Score = 105 bits (116), Expect = 1e-17 Identities = 112/145 (77%), Gaps = 2/145 (1%) Strand=Plus/Minus Query 79929 ATCATCCTTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA-AATAGATCTC 79987 || || || ||| ||||||||||||||||| || ||||| | || ||| || ||||| | Sbjct 345981 ATTATTCTCTACACGTTTCATAAAGAGATCTGGTATCCACATGGC-ATAGAACAGATCCC 345923 Query 79988 TGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAG 80047 ||| ||| |||||||| ||||| || |||||||| || || ||||| | | | ||| Sbjct 345922 TGGCTCTCTGCTCCTCCTTTCCAGTGTTCTTTTTTAGGTCCAGGAATTCAAAGACATCGT 345863 Query 80048 AATGCCACGGTTCCAAGTATATGGC 80072 | |||||||| |||| ||| ||||| Sbjct 345862 AGTGCCACGGCTCCAGGTAAATGGC 345838 Score = 100 bits (110), Expect = 4e-16 Identities = 99/128 (77%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 79669 ATTTCAGTGCAGAGGTTACTACACTTAATGGTTCCTAAATTTTGTTGATTACTCTTTTTG 79728 || || ||||| |||||||| ||||||||||| || | || || ||||| ||||| | Sbjct 346839 ATCTCTGTGCACAGGTTACTGCACTTAATGGTGCCCAGGTTCTGCTGATTGCTCTTGCGG 346780 Query 79729 TTACACGCATCCTTATAAAGAATGAACGGAGTACCAGTTTCAATCTGAGATTCTATAATC 79788 ||||| |||||||| || || ||| | ||||| ||||| || |||| || |||||||| Sbjct 346779 TTACAGGCATCCTTGTACAGCATGTAGGGAGTGCCAGTCTCCGTCTGCGACTCTATAATG 346720 Query 79789 GCTTTCCA 79796 || | ||| Sbjct 346719 GCGTACCA 346712 Score = 100 bits (110), Expect = 4e-16 Identities = 106/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 79058 CTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATATGGTTCCA 79117 |||| || || || ||||||| ||||| || ||||| ||||| ||||||||||| || | Sbjct 351716 CTACCTGGAACTCGCCAGACAGGACTCTGCGTGTGTATATATTGCTGGTATATGGCTCAA 351657 Query 79118 CCGATTCATTATTTCCCAAAATTTGAGCAGTTGATGCCGTTGGCATAGGTGCCACCAATA 79177 || |||||||| |||| ||||| ||||| || ||||| ||||| || |||| | | Sbjct 351656 TGGACTCATTATTGCCCAGGATTTGTGCAGTGGAAGCCGTGGGCATTGGAGCCAGAAGCA 351597 Query 79178 AACTATTTCTAAGACCGTAT 79197 |||| || | | |||||| Sbjct 351596 AACTGTTCCGGACGCCGTAT 351577 Score = 87.8 bits (96), Expect = 3e-12 Identities = 98/131 (75%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 80335 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTG 80394 || || ||||| || | || |||||||||||||| |||||||||||||||| |||||| Sbjct 338670 GTACCAGCATTGAACAGTGTGGGAGAAGCGTGCGTGAACCATTTTTCAGACAACAGATTG 338611 Query 80395 TACGTCTCAATAGCTGATTCTATATCCCATTGATGAATTCCTACCGCGACACGCATTAAC 80454 || || || ||||| | || || || || ||| || || || | || | ||| | | Sbjct 338610 TAGGTTTCGATAGCGGCGTCAATGTCTGTTTTATGTATGCCAACGGATACCCTCATCAGC 338551 Query 80455 ATGTGCTGAGG 80465 |||||||| || Sbjct 338550 ATGTGCTGTGG 338540 >seq6 Length=135134832 Score = 111 bits (122), Expect = 2e-19 Identities = 106/136 (78%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 49982 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 50041 |||| |||||||| || || || ||||| || |||||||| ||||| || || | || | Sbjct 118784199 CCTCATCTCTACTGATCAGCTCATTGGAGAAGGTGAGTCCAGGCATGAGTCCCCTTTTCT 118784140 Query 50042 TAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGG 50101 | ||||| || || | ||||| || ||||| ||||| |||||||||||||| || || | Sbjct 118784139 TTAGCCAGAAAATAGCAGCAAAGGATCCAGAGAAGAATATTCCTTCTACTGCAGCGAATG 118784080 Query 50102 CAACAAGTCTCTCTCC 50117 | || | ||||||||| Sbjct 118784079 CCACCACTCTCTCTCC 118784064 >seq5 Length=146437384 Score = 95.1 bits (104), Expect = 2e-14 Identities = 106/141 (75%), Gaps = 3/141 (2%) Strand=Plus/Minus Query 49614 TTAAAAGTCAACATCTAGAGAAAAATGATTATCTTCTTGA---GACATAACTCCCATTTT 49670 |||||||||| ||||||| | ||| || |||| | | ||||| || ||||| || Sbjct 134144664 TTAAAAGTCAGCATCTAGTGTGAAAGTGTTGTCTTTTGGCTTTGACATGACACCCATCTT 134144605 Query 49671 TTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATTTTC 49730 |||||||| || || || ||||| || ||||| ||||||||||| || || || || Sbjct 134144604 CTGGTATTCGCCAACTTTCTTCTCGAAGAAGTTAGTCTTTCCTTCCAAAGAAATGTTCTC 134144545 Query 49731 CATGAAATCAAACGGATTGGT 49751 |||||| ||||| ||||| || Sbjct 134144544 CATGAAGTCAAATGGATTAGT 134144524 Score = 86.0 bits (94), Expect = 9e-12 Identities = 104/140 (74%), Gaps = 5/140 (4%) Strand=Plus/Minus Query 49613 TTTAAAAGTCAACATCTAGAGAAAAATGATTATCTT----CTTGAGACATAACTCCCATT 49668 ||||||| || ||| || || || || || ||| |||| ||||| || ||||| Sbjct 134156649 TTTAAAATTCGGCATTTAAAGTGAATTGCTTGTCTGTTGCCTTG-GACATGACACCCATC 134156591 Query 49669 TTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATTT 49728 || |||||||| | || || || || |||||||| ||||||||||| ||||| || Sbjct 134156590 TTCTGGTATTCGGCAACTTTCTTCTCAAAGAAATTAGTCTTTCCTTCCAAGGATATGTTC 134156531 Query 49729 TCCATGAAATCAAACGGATT 49748 ||||| |||||||| ||||| Sbjct 134156530 TCCATAAAATCAAATGGATT 134156511 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718207549628080