Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xenopus_20tropicalis_20[refseq_20GCF_5F000004195.3_202016-07-13] 6,822 sequences; 1,440,398,454 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq5 107 2e-18 seq6 96.9 3e-15 >seq5 Length=146437384 Score = 107 bits (118), Expect = 2e-18 Identities = 104/134 (78%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 13896 TCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttttt 13955 |||||||| ||||||||||| || || || || | ||| ||||||| || ||||| ||| Sbjct 134143403 TCATCTCTGCTAATAAGTTCATTAGAGAAAGTGAGTCCAGGCATCAGCCCCCGTTTCTTT 134143344 Query 13956 AACCAAAATATTGCAGCAAATGACCCGGAAAAGAATATTCCCTCAACTGCAGCAAACGCT 14015 | ||| || |||| |||||||| || || ||||| || || ||||| |||||||| || Sbjct 134143343 AGCCAGAAAATTGATGCAAATGAACCAGAGAAGAAAATCCCTTCAACAGCAGCAAATGCC 134143284 Query 14016 ATTAATCGTTCTCC 14029 | | |||||| || Sbjct 134143283 ACCACTCGTTCACC 134143270 Score = 87.8 bits (96), Expect = 2e-12 Identities = 78/98 (80%), Gaps = 0/98 (0%) Strand=Plus/Minus Query 13563 TTAGAAATAACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTA 13622 || || || || ||||| || || ||||| |||| | || |||||||| ||||| || Sbjct 134156608 TTGGACATGACACCCATCTTCTGGTATTCGGCAACTTTCTTCTCAAAGAAATTAGTCTTT 134156549 Query 13623 CCTTCCAGTGATATATTTTCCATAAAATCAAATGGATT 13660 ||||||| ||||| || |||||||||||||||||||| Sbjct 134156548 CCTTCCAAGGATATGTTCTCCATAAAATCAAATGGATT 134156511 Score = 86.0 bits (94), Expect = 6e-12 Identities = 101/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 13524 TAAAAATCAACATCTAATGAAAAAACATTATCGTCTTTGTTAGAAATAACGCCCATTTTT 13583 ||||| ||| |||||| || ||| || || | | || || || || ||||| || Sbjct 134144663 TAAAAGTCAGCATCTAGTGTGAAAGTGTTGTCTTTTGGCTTTGACATGACACCCATCTTC 134144604 Query 13584 TGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTTCC 13643 || ||||| | |||| | || || ||||||||||| || ||||||| || || || ||| Sbjct 134144603 TGGTATTCGCCAACTTTCTTCTCGAAGAAGTTAGTCTTTCCTTCCAAAGAAATGTTCTCC 134144544 Query 13644 ATAAAATCAAATGGATT 13660 || || ||||||||||| Sbjct 134144543 ATGAAGTCAAATGGATT 134144527 >seq6 Length=135134832 Score = 96.9 bits (106), Expect = 3e-15 Identities = 94/121 (78%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 13894 CCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttt 13953 ||||||||||||| || || || || || || || | ||| ||||| | ||| | ||| | Sbjct 118784199 CCTCATCTCTACTGATCAGCTCATTGGAGAAGGTGAGTCCAGGCATGAGTCCCCTTTTCT 118784140 Query 13954 ttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAATATTCCCTCAACTGCAGCAAACG 14013 ||| ||| || || |||||||| || || || ||||||||||| || |||||||| || | Sbjct 118784139 TTAGCCAGAAAATAGCAGCAAAGGATCCAGAGAAGAATATTCCTTCTACTGCAGCGAATG 118784080 Query 14014 C 14014 | Sbjct 118784079 C 118784079 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 479687091194800