Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xenopus_20tropicalis_20[refseq_20GCF_5F000004195.3_202016-07-13] 6,822 sequences; 1,440,398,454 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq106 131 2e-25 seq6 114 2e-20 seq5 100 4e-16 >seq106 Length=555726 Score = 131 bits (144), Expect = 2e-25 Identities = 132/172 (77%), Gaps = 0/172 (0%) Strand=Plus/Minus Query 72763 CTAAATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAGAATG 72822 ||||||| ||| || ||||||||||| | || || |||||||| | ||| || |||||| Sbjct 336128 CTAAATATTTTCTTGGTTTCCTTGTGCAAGTTAGAGACGGCTATCCGGGCAGCCAGAATG 336069 Query 72823 GCATAATCTGGATGTTGTGTAGTACAAGTGGCTGCTATTTCTGCTGCCAGAGTGTCCAAT 72882 ||||||||||| || | ||| || ||||||||| | || ||||| | ||||||| | Sbjct 336068 GCATAATCTGGGTGCTTTGTGGTCAGGGTGGCTGCTGTCTCCGCTGCTAATGTGTCCAGT 336009 Query 72883 TCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTCATAGCTATTT 72934 |||| ||||| || |||||||| | || || || || ||||||| |||| Sbjct 336008 TCTATAGTTGTGACCCCATTATAAAGCCCCTGAATGACTTTCATAGTGATTT 335957 Score = 104 bits (114), Expect = 3e-17 Identities = 106/136 (78%), Gaps = 2/136 (1%) Strand=Plus/Minus Query 72021 TACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA-AATAGATCTCTGGTTCTAT 72079 ||| ||||||||||||||||| || ||||| | || ||| || ||||| |||| ||| | Sbjct 345972 TACACGTTTCATAAAGAGATCTGGTATCCACATGGC-ATAGAACAGATCCCTGGCTCTCT 345914 Query 72080 GCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACG 72139 ||||||| ||||| || |||||||| || || ||||| | | | ||| | ||||||| Sbjct 345913 GCTCCTCCTTTCCAGTGTTCTTTTTTAGGTCCAGGAATTCAAAGACATCGTAGTGCCACG 345854 Query 72140 GTTCCAAGTATATGGC 72155 | |||| ||| ||||| Sbjct 345853 GCTCCAGGTAAATGGC 345838 Score = 93.3 bits (102), Expect = 6e-14 Identities = 89/114 (78%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 71141 CTACTTGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATACGGTTCCA 71200 |||| || || || ||||||| ||||| || ||||| ||||| |||||||| || || | Sbjct 351716 CTACCTGGAACTCGCCAGACAGGACTCTGCGTGTGTATATATTGCTGGTATATGGCTCAA 351657 Query 71201 CTGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCA 71254 ||||||||||| |||| ||||| ||||| || || || ||||| || |||| Sbjct 351656 TGGACTCATTATTGCCCAGGATTTGTGCAGTGGAAGCCGTGGGCATTGGAGCCA 351603 Score = 87.8 bits (96), Expect = 2e-12 Identities = 98/131 (75%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 72418 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTG 72477 || || ||||| || | || |||||||||||||| |||||||||||||||| |||||| Sbjct 338670 GTACCAGCATTGAACAGTGTGGGAGAAGCGTGCGTGAACCATTTTTCAGACAACAGATTG 338611 Query 72478 TACGTCTCAATAGCTGATTCTATATCCCATTGATGTATTCCTACCGCGACACGCATTAAC 72537 || || || ||||| | || || || || |||||| || || | || | ||| | | Sbjct 338610 TAGGTTTCGATAGCGGCGTCAATGTCTGTTTTATGTATGCCAACGGATACCCTCATCAGC 338551 Query 72538 ATATGCTGAGG 72548 || ||||| || Sbjct 338550 ATGTGCTGTGG 338540 >seq6 Length=135134832 Score = 114 bits (126), Expect = 2e-20 Identities = 107/136 (79%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 42087 CCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 42146 ||||||||||||| || | || ||||| || |||||||| ||||| || || | || | Sbjct 118784199 CCTCATCTCTACTGATCAGCTCATTGGAGAAGGTGAGTCCAGGCATGAGTCCCCTTTTCT 118784140 Query 42147 TAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGG 42206 | ||||| || |||| ||||| |||||||| ||||| |||||||||||||| || || | Sbjct 118784139 TTAGCCAGAAAATAGCAGCAAAGGATCCAGAGAAGAATATTCCTTCTACTGCAGCGAATG 118784080 Query 42207 CAATAAGTCTCTCTCC 42222 | | | ||||||||| Sbjct 118784079 CCACCACTCTCTCTCC 118784064 Score = 93.3 bits (102), Expect = 6e-14 Identities = 89/114 (78%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 42563 ACTTCTTCTACCGTCCAAAATGATGCTTCTGCCTTTTTATACATATTCCAGATATCATGA 42622 ||||| ||| ||||||| ||||| || | ||||| |||||||| ||||||||||| | Sbjct 118778808 ACTTCCTCTGCCGTCCAGAATGAGGCCTGGGCCTTCTTATACATTTTCCAGATATCCGGG 118778749 Query 42623 TATTGAATTGGGAAAATAACAAATCTATTTGGATTTGGTGCAAGGATCGGTTCC 42676 || |||||||||||||| ||||||| | || ||| ||||| ||||||| Sbjct 118778748 TAGTGAATTGGGAAAATGACAAATCGTTGAGGGTTTTTCCTAAGGAACGGTTCC 118778695 >seq5 Length=146437384 Score = 100 bits (110), Expect = 4e-16 Identities = 107/141 (76%), Gaps = 3/141 (2%) Strand=Plus/Minus Query 41719 TTAAAAGTCAACATCTAAAGAAAAATGATTGTCTTCTTGA---GACATAACTCCCATTTT 41775 |||||||||| |||||| | ||| ||||||| | | ||||| || ||||| || Sbjct 134144664 TTAAAAGTCAGCATCTAGTGTGAAAGTGTTGTCTTTTGGCTTTGACATGACACCCATCTT 134144605 Query 41776 TTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTCTTTCCTTCCAATGATATATTTTC 41835 |||||||| || || || ||||| || ||||||||||||||||| || || || || Sbjct 134144604 CTGGTATTCGCCAACTTTCTTCTCGAAGAAGTTAGTCTTTCCTTCCAAAGAAATGTTCTC 134144545 Query 41836 CATGAAATCAAACGGATTGGT 41856 |||||| ||||| ||||| || Sbjct 134144544 CATGAAGTCAAATGGATTAGT 134144524 Score = 100 bits (110), Expect = 4e-16 Identities = 107/140 (76%), Gaps = 5/140 (4%) Strand=Plus/Minus Query 41718 TTTAAAAGTCAACATCTAAAGAAAAATGATTGTCTT----CTTGAGACATAACTCCCATT 41773 ||||||| || ||| ||||| || || |||||| |||| ||||| || ||||| Sbjct 134156649 TTTAAAATTCGGCATTTAAAGTGAATTGCTTGTCTGTTGCCTTG-GACATGACACCCATC 134156591 Query 41774 TTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTCTTTCCTTCCAATGATATATTT 41833 || |||||||| | || || || || |||||||||||||||||||| ||||| || Sbjct 134156590 TTCTGGTATTCGGCAACTTTCTTCTCAAAGAAATTAGTCTTTCCTTCCAAGGATATGTTC 134156531 Query 41834 TCCATGAAATCAAACGGATT 41853 ||||| |||||||| ||||| Sbjct 134156530 TCCATAAAATCAAATGGATT 134156511 Score = 96.9 bits (106), Expect = 5e-15 Identities = 79/96 (82%), Gaps = 0/96 (0%) Strand=Plus/Minus Query 42562 TACTTCTTCTACCGTCCAAAATGATGCTTCTGCCTTTTTATACATATTCCAGATATCATG 42621 ||| || || | ||||| ||||| |||||||| || || ||||| | |||||||||||| Sbjct 134140823 TACCTCCTCAGCAGTCCAGAATGAAGCTTCTGCTTTCTTGTACATTTGCCAGATATCATG 134140764 Query 42622 ATATTGAATTGGGAAAATAACAAATCTATTTGGATT 42657 ||| ||||| ||||| || |||||||||| |||||| Sbjct 134140763 ATACTGAATGGGGAAGATCACAAATCTATGTGGATT 134140728 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671081968604720