Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xenopus_20tropicalis_20[refseq_20GCF_5F000004195.3_202016-07-13] 6,822 sequences; 1,440,398,454 total letters Query= NC_005068.1 Length=110907 Score E Sequences producing significant alignments: (Bits) Value seq1 107 1e-18 >seq1 Length=194866763 Score = 107 bits (118), Expect = 1e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 43913 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTCC 43972 ||||| || || ||| ||||| ||||| || ||||| | | || |||| ||| Sbjct 151539518 ACCAAGTGCAGTGTGGATTCTTTCTGAATGTTGTAATCAGAGAGTGTGCGGCCATCTTCC 151539459 Query 43973 AATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGAA 44032 | || ||||| ||||| ||||| | |||||||| |||| | ||||||||| ||| | Sbjct 151539458 AGCTGCTTTCCGGCAAAGATCAATCTCTGCTGGTCGGGAGGAATACCTTCTTTGTCTTGA 151539399 Query 44033 ATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTTA 44092 |||||| ||| || | ||| || || || || || || | || ||||||||| Sbjct 151539398 ATTTTTGCTTTTACATTTTCAATGGTGTCACTTGGTTCAACCTCAAGGGTTATTGTTTTA 151539339 Query 44093 CCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || || | |||||||||||||||||||| Sbjct 151539338 CCAGTCAGGGTCTTCACAAATATTTGCAT 151539310 Score = 89.7 bits (98), Expect = 4e-13 Identities = 157/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 43895 CCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTT 43954 || |||||||| | | |||||||| || ||| || ||||| || ||||| || | Sbjct 151539080 CCACCTCTCAAACGGAGAACCAAATGCAGAGTGGATTCCTTTTGGATGTTATAGTCTGAT 151539021 Query 43955 AATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGT 44014 || || |||| |||| ||||| || ||||| ||||||| ||| || || |||| Sbjct 151539020 AAGGTTCGGCCATCTTCCAGCTGTTTGCCAGCAAAGATCAACCTTTGTTGATCTGGAGGA 151538961 Query 44015 ACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACA 44074 | ||||||||||| ||||| || || | ||| ||| || ||||| || Sbjct 151538960 ATGCCTTCTTTATCCTGTATTTTAGCCTTCACATTTTCAATAGTGTCACTTGGCTCAACT 151538901 Query 44075 TCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCATGT 44123 || | || || || || || || | || ||||||||||| ||||||| Sbjct 151538900 TCTAGTGTGATGGTCTTCCCAGTGAGCGTTTTCACAAATATCTGCATGT 151538852 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 354748102681656