Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xenopus_20tropicalis_20[refseq_20GCF_5F000004195.3_202016-07-13] 6,822 sequences; 1,440,398,454 total letters Query= NC_005832.1 Length=106332 Score E Sequences producing significant alignments: (Bits) Value seq6 100 2e-16 >seq6 Length=135134832 Score = 100 bits (110), Expect = 2e-16 Identities = 118/160 (74%), Gaps = 0/160 (0%) Strand=Plus/Plus Query 25775 TGTCCGTGTACTCTGCTCCGAAATACCTCCACTGGAACCCGTACACCGGTCCTAGGTCTC 25834 |||| |||| || || || || | ||||||||| || || ||||| ||||| || |||| Sbjct 93048232 TGTCTTTGTATTCAGCACCAAAGTGCCTCCACTGAAAGCCATACACTGGTCCAAGATCTC 93048291 Query 25835 CATCTTCCCTGTGCTCAAAGCCCCTCTTATCCAAAAAGTCTCTGGAACCATTGGCGTCCC 25894 | || || |||| || || ||| |||||||| || | ||| ||||| || |||| Sbjct 93048292 CTTCCTCTCTGTTTGAGAATCCTTGCTTGTCCAAAAATTCCCGGGAGCCATTTGCATCCC 93048351 Query 25895 AGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGT 25934 |||||||||| || || | || || ||||| ||||| || Sbjct 93048352 AGATCTTTACACCTTTTGCAGAAAGTTCTTTTGAGTTGGT 93048391 Score = 95.1 bits (104), Expect = 8e-15 Identities = 119/162 (73%), Gaps = 1/162 (1%) Strand=Plus/Plus Query 25494 CCGGTAACGTAAGCCATCATGTACGTGAGGAGAAAGTAGCTGGCGATGTTAAAGGGTACC 25553 || || || | ||| ||||| || ||||| | || ||||| ||||| ||||| || Sbjct 93045945 CCAGTGACATGAGCAATCATATAAGTGAGCAAGGCATAACTGGCAATGTTGAAGGGCACT 93046004 Query 25554 CCGAACCCCATGTCCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTTCGTCGCTCAC 25613 || | ||||||| |||| |||| |||||| |||||||| || | ||||| ||| | || Sbjct 93046005 CCCAGGCCCATGT-CCCCAGACCGCTGGTACAGCTGACAGGATAACTCTTTATCGATTAC 93046063 Query 25614 GTAAAACTGACACATGGTGTAGCACGGAGGAAGAGCTATAAG 25655 ||| ||||| || | |||| || || || ||||| ||||| Sbjct 93046064 GTAGAACTGGCAAAGTGTGTGACAAGGCGGCAGAGCCATAAG 93046105 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 340109319897006