Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xenopus_20tropicalis_20[refseq_20GCF_5F000004195.3_202016-07-13] 6,822 sequences; 1,440,398,454 total letters Query= NC_006150.1 Length=221454 Score E Sequences producing significant alignments: (Bits) Value seq4 96.9 5e-15 seq8 86.0 9e-12 >seq4 Length=133473341 Score = 96.9 bits (106), Expect = 5e-15 Identities = 95/123 (77%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 10029 CTTACCCCATGTCCCAGTCCTTTAGTGAAGGCCGGGCCTCGCGCCAAATCAGTCCTAAAA 10088 ||||||||||| |||| | |||| |||||||| | ||| |||| ||| || || || Sbjct 109202430 CTTACCCCATGGCCCAATGCTTTGGTGAAGGCAGCCCCTTTGGCCATATCTGTTCTGAAG 109202371 Query 10089 AACTGGTGCGTGAAATGTTGGCCAAAAAAGGCAAACATTAAGTTGGTGCCCTGGGGATCG 10148 |||||||| ||||| ||||| ||||||| |||||||| | |||| ||| || || || Sbjct 109202370 AACTGGTGTGTGAAGTGTTGAGCAAAAAAAGCAAACATAACATTGGAGCCTTGAGGGTCA 109202311 Query 10149 GGA 10151 ||| Sbjct 109202310 GGA 109202308 >seq8 Length=117616046 Score = 86.0 bits (94), Expect = 9e-12 Identities = 98/130 (75%), Gaps = 4/130 (3%) Strand=Plus/Plus Query 10029 CTTACCCCATGTCCCAGTCCTTTAGTGAAGGCCGGGCC--TCGCGCCAAATCAGTCCTAA 10086 ||||| ||||| || | ||||||| |||| || | || || |||| || ||| | | Sbjct 15478312 CTTACACCATGACCGAATCCTTTAATGAAACCCCGTCCCATCCTGCCATAT--GTCTTGA 15478369 Query 10087 AAAACTGGTGCGTGAAATGTTGGCCAAAAAAGGCAAACATTAAGTTGGTGCCCTGGGGAT 10146 ||||||| ||||||||||| ||| |||| |||||||||| | ||| ||||| || || | Sbjct 15478370 AAAACTGATGCGTGAAATGCTGGGCAAAGAAGGCAAACAGGAGGTTTGTGCCTTGCGGGT 15478429 Query 10147 CGGGAGTGAA 10156 | || |||| Sbjct 15478430 CTGGGATGAA 15478439 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 708464380547680