Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Xenopus_20tropicalis_20[refseq_20GCF_5F000004195.3_202016-07-13]
6,822 sequences; 1,440,398,454 total letters
Query= NC_006150.1
Length=221454
Score E
Sequences producing significant alignments: (Bits) Value
seq4 96.9 5e-15
seq8 86.0 9e-12
>seq4
Length=133473341
Score = 96.9 bits (106), Expect = 5e-15
Identities = 95/123 (77%), Gaps = 0/123 (0%)
Strand=Plus/Minus
Query 10029 CTTACCCCATGTCCCAGTCCTTTAGTGAAGGCCGGGCCTCGCGCCAAATCAGTCCTAAAA 10088
||||||||||| |||| | |||| |||||||| | ||| |||| ||| || || ||
Sbjct 109202430 CTTACCCCATGGCCCAATGCTTTGGTGAAGGCAGCCCCTTTGGCCATATCTGTTCTGAAG 109202371
Query 10089 AACTGGTGCGTGAAATGTTGGCCAAAAAAGGCAAACATTAAGTTGGTGCCCTGGGGATCG 10148
|||||||| ||||| ||||| ||||||| |||||||| | |||| ||| || || ||
Sbjct 109202370 AACTGGTGTGTGAAGTGTTGAGCAAAAAAAGCAAACATAACATTGGAGCCTTGAGGGTCA 109202311
Query 10149 GGA 10151
|||
Sbjct 109202310 GGA 109202308
>seq8
Length=117616046
Score = 86.0 bits (94), Expect = 9e-12
Identities = 98/130 (75%), Gaps = 4/130 (3%)
Strand=Plus/Plus
Query 10029 CTTACCCCATGTCCCAGTCCTTTAGTGAAGGCCGGGCC--TCGCGCCAAATCAGTCCTAA 10086
||||| ||||| || | ||||||| |||| || | || || |||| || ||| | |
Sbjct 15478312 CTTACACCATGACCGAATCCTTTAATGAAACCCCGTCCCATCCTGCCATAT--GTCTTGA 15478369
Query 10087 AAAACTGGTGCGTGAAATGTTGGCCAAAAAAGGCAAACATTAAGTTGGTGCCCTGGGGAT 10146
||||||| ||||||||||| ||| |||| |||||||||| | ||| ||||| || || |
Sbjct 15478370 AAAACTGATGCGTGAAATGCTGGGCAAAGAAGGCAAACAGGAGGTTTGTGCCTTGCGGGT 15478429
Query 10147 CGGGAGTGAA 10156
| || ||||
Sbjct 15478430 CTGGGATGAA 15478439
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 708464380547680
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |