Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xenopus_20tropicalis_20[refseq_20GCF_5F000004195.3_202016-07-13] 6,822 sequences; 1,440,398,454 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq1 161 9e-35 seq2 127 2e-24 >seq1 Length=194866763 Score = 161 bits (178), Expect = 9e-35 Identities = 177/231 (77%), Gaps = 6/231 (3%) Strand=Plus/Minus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 || |||||||| || | ||||| |||| ||| ||||||||||| | |||||| || | Sbjct 151539080 CCACCTCTCAAACGGAGAACCAAATGCAGAGTGGATTCCTTTTGGATGTTATAGTC--TG 151539023 Query 94841 ATAGTGTTGGA--ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAG 94898 ||| ||| | ||| ||||||||||| || ||||||| || ||||| |||||||||| Sbjct 151539022 ATAAGGTTCGGCCATCTTCCAGCTGTTTGCCAGCAAAGATCAACCTTTGTTGATCTGGAG 151538963 Query 94899 GAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGG-TCG 94957 |||| |||||||| || | ||||| ||||| || | | ||||||| | ||| || Sbjct 151538962 GAATGCCTTCTTTATCCTGTATTTTAGCCTTCACATTTTCAATAGTGTCA-CTTGGCTCA 151538904 Query 94958 ACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATG 95008 || || | |||||||| || ||||| || ||||||||||| ||||||||| Sbjct 151538903 ACTTCTAGTGTGATGGTCTTCCCAGTGAGCGTTTTCACAAATATCTGCATG 151538853 Score = 140 bits (154), Expect = 3e-28 Identities = 177/241 (73%), Gaps = 2/241 (1%) Strand=Plus/Minus Query 94768 AAAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCAC 94827 |||| | | || || ||||| | || | |||||||||| || ||||| || || | Sbjct 151539549 AAAAATCTGCATCCCACCTCTGAGACGAAGAACCAAGTGCAGTGTGGATTCTTTCTGAAT 151539490 Query 94828 GTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTG 94887 ||| ||||| | ||| | ||| |||||||| |||||| ||||||| ||||| || Sbjct 151539489 GTTGTAATCAGAGAGTGTGCGGCCATCTTCCAGCTGCTTTCCGGCAAAGATCAATCTCTG 151539430 Query 94888 CTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTC 94947 ||| || |||||||||||||||||||| | ||||||||| || || | | ||||| Sbjct 151539429 CTGGTCGGGAGGAATACCTTCTTTGTCTTGAATTTTTGCTTTTACATTTTCAATGGTGTC 151539370 Query 94948 AGCGTGG-TCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCA 95006 | | ||| || || |||| || || ||||| ||||| || || |||||||| || |||| Sbjct 151539369 A-CTTGGTTCAACCTCAAGGGTTATTGTTTTACCAGTCAGGGTCTTCACAAATATTTGCA 151539311 Query 95007 T 95007 | Sbjct 151539310 T 151539310 Score = 120 bits (132), Expect = 3e-22 Identities = 168/236 (71%), Gaps = 0/236 (0%) Strand=Plus/Minus Query 94772 TTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTA 94831 ||||| || || || ||||| || | |||| ||||| || ||||| || || | ||| Sbjct 151539773 TTTTAAACCCCACCCCTCAAACGAAGGACCAGGTGCAGGGTGGATTCTTTCTGAATGTTG 151539714 Query 94832 TAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGA 94891 ||||| | |||| | ||| |||||||| || || ||||||| || || ||||| Sbjct 151539713 TAATCAGAGAGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATCAACCTCTGCTGG 151539654 Query 94892 TCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCG 94951 || || ||||| ||||| || || | ||||||||||| || | | |||||| | Sbjct 151539653 TCAGGGGGAATGCCTTCCTTATCTTGGATTTTTGCCTTTACATTCTCAATTGTGTCACTG 151539594 Query 94952 TGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 | || || |||| || ||||| || ||||| || || || ||||| |||||||| Sbjct 151539593 GGCTCAACTTCAAGAGTAATGGTCTTCCCAGTCAGGGTCTTGACAAAAATCTGCAT 151539538 Score = 118 bits (130), Expect = 1e-21 Identities = 173/241 (72%), Gaps = 3/241 (1%) Strand=Plus/Minus Query 94769 AAAT-TTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCAC 94827 |||| ||| || || ||||| | || | || |||||||| || ||||| ||||| | Sbjct 151539321 AAATATTTGCATCCCACCTCTGAGACGAAGAACTAAGTGCAAGGTGGATTCTTTTTGAAT 151539262 Query 94828 GTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTG 94887 ||| || || | |||| ||| |||||||| || || |||| || ||||| || Sbjct 151539261 GTTGTAGTCAGAAAGAGTGCGACCATCTTCCAGCTGCTTGCCAGCAAAAATCAATCTCTG 151539202 Query 94888 CTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTC 94947 ||| || || ||||| ||||| ||||| | ||||||||||| || | | ||| || Sbjct 151539201 CTGGTCAGGGGGAATGCCTTCCTTGTCTTGGATTTTTGCCTTTACATTCTCAATAGTATC 151539142 Query 94948 AGCGTGG-TCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCA 95006 | | ||| || || |||| || ||||| || ||||| || || |||||||| ||||||| Sbjct 151539141 A-CTTGGCTCAACCTCAAGGGTAATGGTCTTCCCAGTCAGGGTCTTCACAAATATCTGCA 151539083 Query 95007 T 95007 | Sbjct 151539082 T 151539082 >seq2 Length=170201513 Score = 127 bits (140), Expect = 2e-24 Identities = 184/256 (72%), Gaps = 3/256 (1%) Strand=Plus/Minus Query 94760 GGTTTTTTAAAATTT-TACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTC 94818 ||||||| ||| | | || ||| ||||||| || | || | |||| || ||||| Sbjct 31610928 GGTTTTTACAAAGATCTGCATTCCACCTCTCAGACGAAGGACAAGATGCAGGGTGGATTC 31610869 Query 94819 CTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGAT 94878 || || | ||||| || | ||| | ||| |||||||| || ||| ||||||| Sbjct 31610868 TTTCTGGATATTATAGTCAGAAAGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGAT 31610809 Query 94879 TAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCC 94938 || || ||||| ||||| || |||||||||||||| | || ||||| ||||| | Sbjct 31610808 CAACCTCTGCTGGTCTGGGGGGATACCTTCTTTGTCTTGGATCTTTGCTTTGACATTCTC 31610749 Query 94939 GACAGTGTCAGCGTGG-TCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAA 94997 | |||||| | ||| || || || | || |||||||| ||||| || |||||||||| Sbjct 31610748 TATTGTGTCA-CTTGGCTCAACTTCCAAGGTAATGGTTTTGCCAGTCAGGGTTTTCACAA 31610690 Query 94998 AGATCTGCATGCTTAC 95013 |||||||||| || || Sbjct 31610689 AGATCTGCATTCTGAC 31610674 Score = 127 bits (140), Expect = 2e-24 Identities = 183/252 (73%), Gaps = 7/252 (3%) Strand=Plus/Minus Query 94760 GGTTTTTTAAAATTT-TACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTC 94818 ||||||| ||| | | || ||| ||||||| || | || | |||| || ||||| Sbjct 31611156 GGTTTTTACAAAGATCTGCATTCCACCTCTCAGACGAAGGACAAGATGCAGGGTGGATTC 31611097 Query 94819 CTTTTGCACGTTATAATCGCTCATAGTGTTGGA--ATCCTCCAGCTGTTTTCCGCCAAAG 94876 || || | ||||| || | ||||| || ||| |||||||| || ||| ||||| Sbjct 31611096 TTTCTGGATATTATAGTCAG--AAAGTGTGCGACCATCTTCCAGCTGCTTGCCGGCAAAG 31611039 Query 94877 ATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCG 94936 || || || ||||| |||||||| |||||||||||||| | || ||||| ||||| Sbjct 31611038 ATCAACCTCTGCTGGTCTGGAGGGATACCTTCTTTGTCTTGGATCTTTGCTTTGACATTC 31610979 Query 94937 CCGACAGTGTCAGCGTGG-TCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCAC 94995 | | |||||| | ||| || || || | |||||||| || ||||| || ||||| || Sbjct 31610978 TCTATTGTGTCA-CTTGGCTCTACCTCCAGGGTGATGGTCTTGCCAGTCAGGGTTTTTAC 31610920 Query 94996 AAAGATCTGCAT 95007 |||||||||||| Sbjct 31610919 AAAGATCTGCAT 31610908 Score = 127 bits (140), Expect = 2e-24 Identities = 178/246 (72%), Gaps = 3/246 (1%) Strand=Plus/Minus Query 94763 TTTTTAAAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTT 94822 ||||| | ||| ||| || ||||||| || | || | |||| || ||||| ||| Sbjct 31611835 TTTTTTCACTTTAACAA-CCACCTCTCAGACGAAGGACAAGATGCAGGGTGGATTCTTTT 31611777 Query 94823 TGCACGTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAAT 94882 || | ||| || || | ||| | ||| |||||||| || ||| ||||||| || Sbjct 31611776 TGGATGTTGTAGTCAGAAAGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATCAAC 31611717 Query 94883 CTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACA 94942 || ||||| |||||||| |||||||||||||| | || ||||| ||||| | | Sbjct 31611716 CTCTGCTGGTCTGGAGGGATACCTTCTTTGTCTTGGATCTTTGCTTTGACATTCTCTATT 31611657 Query 94943 GTGTCAGCGTGG-TCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGAT 95001 |||||| | ||| || || || | |||||||| || ||||| || ||||| |||||||| Sbjct 31611656 GTGTCA-CTTGGCTCTACCTCCAAGGTGATGGTCTTGCCAGTCAGGGTTTTTACAAAGAT 31611598 Query 95002 CTGCAT 95007 |||||| Sbjct 31611597 CTGCAT 31611592 Score = 125 bits (138), Expect = 6e-24 Identities = 180/250 (72%), Gaps = 3/250 (1%) Strand=Plus/Minus Query 94760 GGTTTTTTAAAATTT-TACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTC 94818 ||||||| ||| | | || ||| ||||||| || | || | |||| || ||||| Sbjct 31611384 GGTTTTTACAAAGATCTGCATTCCACCTCTCAGACGAAGGACAAGATGCAGGGTGGATTC 31611325 Query 94819 CTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGAT 94878 || || | ||| || || | ||| | ||| |||||||| || ||| ||||||| Sbjct 31611324 TTTCTGGATGTTGTAGTCAGAAAGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGAT 31611265 Query 94879 TAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCC 94938 || || ||||| |||||||| |||||||||||||| | || ||||| ||||| | Sbjct 31611264 CAACCTCTGCTGGTCTGGAGGGATACCTTCTTTGTCTTGGATCTTTGCTTTGACATTCTC 31611205 Query 94939 GACAGTGTCAGCGTGG-TCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAA 94997 | |||||| | ||| || || || | |||||||| || ||||| || ||||| |||| Sbjct 31611204 TATTGTGTCA-CTTGGCTCTACCTCCAGGGTGATGGTCTTGCCAGTCAGGGTTTTTACAA 31611146 Query 94998 AGATCTGCAT 95007 |||||||||| Sbjct 31611145 AGATCTGCAT 31611136 Score = 125 bits (138), Expect = 6e-24 Identities = 180/250 (72%), Gaps = 3/250 (1%) Strand=Plus/Minus Query 94760 GGTTTTTTAAAATTT-TACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTC 94818 ||||||| ||| | | || ||| ||||||| || | || | |||| || ||||| Sbjct 31611612 GGTTTTTACAAAGATCTGCATTCCACCTCTCAGACGAAGGACAAGATGCAGGGTGGATTC 31611553 Query 94819 CTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGAT 94878 || || | ||||| || | ||| | ||| |||||||| || ||| ||||||| Sbjct 31611552 TTTCTGGATATTATAGTCAGAAAGTGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGAT 31611493 Query 94879 TAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCC 94938 || || ||||| |||||||| |||||||||||||| | || ||||| ||||| | Sbjct 31611492 CAACCTCTGCTGGTCTGGAGGGATACCTTCTTTGTCTTGGATCTTTGCTTTGACATTCTC 31611433 Query 94939 GACAGTGTCAGCGTGG-TCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAA 94997 | |||||| | ||| || || || | |||||||| || ||||| || ||||| |||| Sbjct 31611432 TATTGTGTCA-CTTGGCTCTACCTCCAGGGTGATGGTCTTGCCAGTCAGGGTTTTTACAA 31611374 Query 94998 AGATCTGCAT 95007 |||||||||| Sbjct 31611373 AGATCTGCAT 31611364 Score = 118 bits (130), Expect = 1e-21 Identities = 181/254 (71%), Gaps = 3/254 (1%) Strand=Plus/Minus Query 94760 GGTTTTTTAAAATTT-TACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTC 94818 ||||||| ||| | | || ||| || |||| || | || | |||| ||| || || Sbjct 31802722 GGTTTTTACAAAGATCTGCATTCCACCCCTCAGACGAAGGACAAGATGCAGAGTTGACTC 31802663 Query 94819 CTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGAT 94878 ||||| | || ||||| | | | | |||| || ||||| || ||| ||||||| Sbjct 31802662 TTTTTGTATATTGTAATCAGCAAGACTACGGCAATCTTCAAGCTGCTTGCCGGCAAAGAT 31802603 Query 94879 TAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCC 94938 || || ||||| ||||| || |||||||||||||| | || ||||| ||||| | Sbjct 31802602 CAACCTCTGCTGGTCTGGGGGGATACCTTCTTTGTCTTGGATCTTTGCTTTGACATTCTC 31802543 Query 94939 GACAGTGTCAGCGTGG-TCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAA 94997 | |||||| | ||| || || || | |||||||| || ||||| || ||||| |||| Sbjct 31802542 TATTGTGTCA-CTTGGCTCTACCTCCAGGGTGATGGTCTTGCCAGTCAGGGTTTTTACAA 31802484 Query 94998 AGATCTGCATGCTT 95011 ||||||||||| || Sbjct 31802483 AGATCTGCATGATT 31802470 Score = 116 bits (128), Expect = 3e-21 Identities = 178/250 (71%), Gaps = 3/250 (1%) Strand=Plus/Minus Query 94760 GGTTTTTTAAAATTT-TACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTC 94818 ||||||| ||| | | || ||| ||||||| || | || | |||| || ||||| Sbjct 31802950 GGTTTTTACAAAGATCTGCATTCCACCTCTCAGACGAAGTACAAGATGCAGGGTGGATTC 31802891 Query 94819 CTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGAT 94878 || || | ||| || || | | ||| | ||| |||||||| || || ||||||| Sbjct 31802890 TTTCTGGATGTTGTAGTCACAAAGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGAT 31802831 Query 94879 TAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCC 94938 || || ||||| |||||||| |||||||||||||| | || ||| | ||||| | Sbjct 31802830 CAACCTCTGCTGGTCTGGAGGGATACCTTCTTTGTCTTGGATCTTTCCTTTGACATTCTC 31802771 Query 94939 GACAGTGTCAGCGTGG-TCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAA 94997 | |||||| | ||| || || || | || ||||| || ||||| || ||||| |||| Sbjct 31802770 TATTGTGTCA-CTTGGCTCTACCTCCAGAGTAATGGTCTTGCCAGTCAGGGTTTTTACAA 31802712 Query 94998 AGATCTGCAT 95007 |||||||||| Sbjct 31802711 AGATCTGCAT 31802702 Score = 116 bits (128), Expect = 3e-21 Identities = 164/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 || ||||||| || | || | |||| ||| ||||| || || | ||||| || | Sbjct 31803384 CCACCTCTCAGACGAAGGACAAGATGCAGAGTTGATTCTTTCTGGATATTATAGTCACAA 31803325 Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900 | ||| | ||| |||||||| || ||| ||||||| || || ||||| ||||| || Sbjct 31803324 AGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATCAACCTCTGCTGGTCTGGGGGG 31803265 Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGG-TCGAC 94959 |||||||||||||| | || |||| || || | | |||||| | ||| || || Sbjct 31803264 ATACCTTCTTTGTCTTGGATCTTTGATTTAACATTCTCAATGGTGTCA-CTTGGCTCTAC 31803206 Query 94960 GTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || | |||||||| || ||||| || ||||| |||||||||||||| Sbjct 31803205 CTCCAGGGTGATGGTCTTGCCAGTCAGGGTTTTTACAAAGATCTGCAT 31803158 Score = 111 bits (122), Expect = 1e-19 Identities = 177/250 (71%), Gaps = 3/250 (1%) Strand=Plus/Minus Query 94760 GGTTTTTTAAAATTT-TACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTC 94818 ||||||| ||| | | || ||| ||||||| || | || | |||| || ||||| Sbjct 31803178 GGTTTTTACAAAGATCTGCATTCCACCTCTCAGACGAAGGACAAGATGCAGGGTGGATTC 31803119 Query 94819 CTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGAT 94878 ||| || | || || || | | ||| | ||| || || || || ||| ||||||| Sbjct 31803118 CTTCTGGATATTGTAGTCACAAAGGGTGCGGCCATCTTCTAGTTGCTTGCCGGCAAAGAT 31803059 Query 94879 TAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCC 94938 || || ||||| |||||||| |||||||||||||| | || |||| || || | Sbjct 31803058 CAACCTCTGCTGGTCTGGAGGGATACCTTCTTTGTCTTGGATCTTTGATTTAACATTCTC 31802999 Query 94939 GACAGTGTCAGCGTGG-TCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAA 94997 | |||||| | ||| || || || | |||||||| || ||||| || ||||| |||| Sbjct 31802998 TATGGTGTCA-CTTGGCTCTACCTCCAGGGTGATGGTCTTGCCAGTCAGGGTTTTTACAA 31802940 Query 94998 AGATCTGCAT 95007 |||||||||| Sbjct 31802939 AGATCTGCAT 31802930 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448252971967920