Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xenopus_20tropicalis_20[refseq_20GCF_5F000004195.3_202016-07-13] 6,822 sequences; 1,440,398,454 total letters Query= NC_006966.1 Length=166259 Score E Sequences producing significant alignments: (Bits) Value seq5 102 9e-17 >seq5 Length=146437384 Score = 102 bits (112), Expect = 9e-17 Identities = 104/136 (76%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 21498 CTTCATCCCTACTTATTAATTCATTAGAAAATGTTAAACCGGGCATTAATCCTCTCTTTT 21557 ||||||| || || || | ||||||||| || || | || ||||| | || | || | Sbjct 134143405 CTTCATCTCTGCTAATAAGTTCATTAGAGAAAGTGAGTCCAGGCATCAGCCCCCGTTTCT 134143346 Query 21558 TTAACCAAAATATTGACGCAAATGCTCCTGAAAAGAAAATGCCCTCAACGGCAGCAAATG 21617 ||| ||| || ||||| ||||||| || || |||||||| || ||||| |||||||||| Sbjct 134143345 TTAGCCAGAAAATTGATGCAAATGAACCAGAGAAGAAAATCCCTTCAACAGCAGCAAATG 134143286 Query 21618 CAACTAATCGTTCACC 21633 | || | ||||||||| Sbjct 134143285 CCACCACTCGTTCACC 134143270 Score = 96.9 bits (106), Expect = 4e-15 Identities = 104/138 (75%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 21127 TTAAAAATCAGCATCTAATGAGAAAACATTATCTTCtttttttGACATAATTCCCATTTT 21186 |||||| |||||||||| || |||| || |||| | |||||||| | ||||| || Sbjct 134144664 TTAAAAGTCAGCATCTAGTGTGAAAGTGTTGTCTTTTGGCTTTGACATGACACCCATCTT 134144605 Query 21187 TTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAATGATATAGATTC 21246 || || || | |||| | || ||||| || || |||||||||||||| || || || Sbjct 134144604 CTGGTATTCGCCAACTTTCTTCTCGAAGAAGTTAGTCTTTCCTTCCAAAGAAATGTTCTC 134144545 Query 21247 CATAAAATCAAATGGATT 21264 ||| || ||||||||||| Sbjct 134144544 CATGAAGTCAAATGGATT 134144527 Score = 91.5 bits (100), Expect = 2e-13 Identities = 113/155 (73%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 21125 ATTTAAAAATCAGCATCTAATGAGAAAACATTATCTTCtttttttGACATAATTCCCATT 21184 |||||||| || |||| ||| | ||| || ||| | || ||||| | ||||| Sbjct 134156650 ATTTAAAATTCGGCATTTAAAGTGAATTGCTTGTCTGTTGCCTTGGACATGACACCCATC 134156591 Query 21185 TTTTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAATGATATAGAT 21244 || || || || |||| | || || || ||||| |||||||||||||| ||||| Sbjct 134156590 TTCTGGTATTCGGCAACTTTCTTCTCAAAGAAATTAGTCTTTCCTTCCAAGGATATGTTC 134156531 Query 21245 TCCATAAAATCAAATGGATTTTCAGATTTAAATAT 21279 |||||||||||||||||||| ||| ||||| || Sbjct 134156530 TCCATAAAATCAAATGGATTCTCACTCTTAAAAAT 134156496 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 531855442159280