Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xenopus_20tropicalis_20[refseq_20GCF_5F000004195.3_202016-07-13] 6,822 sequences; 1,440,398,454 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq106 131 2e-25 seq6 114 2e-20 seq5 107 2e-18 >seq106 Length=555726 Score = 131 bits (144), Expect = 2e-25 Identities = 132/172 (77%), Gaps = 0/172 (0%) Strand=Plus/Minus Query 63957 CTAAATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAGAATG 64016 ||||||| ||| || ||||||||||| | || || |||||||| | ||| || |||||| Sbjct 336128 CTAAATATTTTCTTGGTTTCCTTGTGCAAGTTAGAGACGGCTATCCGGGCAGCCAGAATG 336069 Query 64017 GCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCAAT 64076 |||||||| || || | ||| || ||||||||| | || ||||| | ||||||| | Sbjct 336068 GCATAATCTGGGTGCTTTGTGGTCAGGGTGGCTGCTGTCTCCGCTGCTAATGTGTCCAGT 336009 Query 64077 TCTACCGTTGTTACTCCATTATATATTCCTTGAATAACCTTCATAGCTATTT 64128 |||| ||||| || |||||||| | || ||||| || ||||||| |||| Sbjct 336008 TCTATAGTTGTGACCCCATTATAAAGCCCCTGAATGACTTTCATAGTGATTT 335957 Score = 100 bits (110), Expect = 4e-16 Identities = 113/149 (76%), Gaps = 2/149 (1%) Strand=Plus/Minus Query 63216 ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA-AATAGATCTCTGGTTCTATG 63274 || ||||||||||||||||| || ||||| | || ||| || ||||| |||| ||| || Sbjct 345971 ACACGTTTCATAAAGAGATCTGGTATCCACATGGC-ATAGAACAGATCCCTGGCTCTCTG 345913 Query 63275 TTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGG 63334 ||||| ||||| || |||||||| || || ||||| | | | ||| | |||||||| Sbjct 345912 CTCCTCCTTTCCAGTGTTCTTTTTTAGGTCCAGGAATTCAAAGACATCGTAGTGCCACGG 345853 Query 63335 TTCCAAGTATATGGCCATAACTCCAGGCC 63363 |||| ||| ||||| | | ||||||| Sbjct 345852 CTCCAGGTAAATGGCAAATGCACCAGGCC 345824 Score = 95.1 bits (104), Expect = 2e-14 Identities = 105/140 (75%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 62335 CTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCA 62394 |||| || || || ||||||| ||||| || ||||| ||||| |||||||| || || | Sbjct 351716 CTACCTGGAACTCGCCAGACAGGACTCTGCGTGTGTATATATTGCTGGTATATGGCTCAA 351657 Query 62395 CCGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATA 62454 ||||||||||| |||| ||||| ||||| || || || ||||| || |||| | | Sbjct 351656 TGGACTCATTATTGCCCAGGATTTGTGCAGTGGAAGCCGTGGGCATTGGAGCCAGAAGCA 351597 Query 62455 AACTATTTCTAAGACCGTAT 62474 |||| || | | |||||| Sbjct 351596 AACTGTTCCGGACGCCGTAT 351577 Score = 87.8 bits (96), Expect = 2e-12 Identities = 98/131 (75%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 63612 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTG 63671 || || ||||| || | || |||||||||||||| |||||||||||||| | |||||| Sbjct 338670 GTACCAGCATTGAACAGTGTGGGAGAAGCGTGCGTGAACCATTTTTCAGACAACAGATTG 338611 Query 63672 TACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAAC 63731 || || || ||||| | ||| || || || ||| || || || | || | ||| | | Sbjct 338610 TAGGTTTCGATAGCGGCGTCAATGTCTGTTTTATGTATGCCAACGGATACCCTCATCAGC 338551 Query 63732 ATGTGCTGAGG 63742 |||||||| || Sbjct 338550 ATGTGCTGTGG 338540 >seq6 Length=135134832 Score = 114 bits (126), Expect = 2e-20 Identities = 107/136 (79%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 33326 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33385 |||| |||||||| || || || ||||| || |||||||| ||||| || || | || | Sbjct 118784199 CCTCATCTCTACTGATCAGCTCATTGGAGAAGGTGAGTCCAGGCATGAGTCCCCTTTTCT 118784140 Query 33386 TAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33445 | ||||| || || | ||| || |||||||| ||||| ||||||||||||||||| || | Sbjct 118784139 TTAGCCAGAAAATAGCAGCAAAGGATCCAGAGAAGAATATTCCTTCTACTGCAGCGAATG 118784080 Query 33446 CAATAAGTCTCTCTCC 33461 | | | ||||||||| Sbjct 118784079 CCACCACTCTCTCTCC 118784064 >seq5 Length=146437384 Score = 107 bits (118), Expect = 2e-18 Identities = 95/119 (80%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 33328 TCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 33387 || ||||| || || ||||| || || || |||||||| ||||| || || || || || Sbjct 134155215 TCATCTCTGCTGATAAGTTCATTAGAGAAAGTGAGTCCAGGCATCAGCCCCCGTTTCTTC 134155156 Query 33388 AGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGGC 33446 ||||| ||||||||||| ||||| || || || ||||| ||||| || ||||||||||| Sbjct 134155155 AGCCAGAATATGGAAGCAAATGAACCGGAGAAAAAGATCCCTTCAACAGCAGCAAAGGC 134155097 Score = 91.5 bits (100), Expect = 2e-13 Identities = 105/141 (74%), Gaps = 3/141 (2%) Strand=Plus/Minus Query 32958 TTAAAAGTCAACATCTAAAGAAAAATGATTATCTTCTTGA---GACATAACTCCCATTTT 33014 |||||||||| |||||| | ||| || |||| | | ||||| || ||||| || Sbjct 134144664 TTAAAAGTCAGCATCTAGTGTGAAAGTGTTGTCTTTTGGCTTTGACATGACACCCATCTT 134144605 Query 33015 TTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATTTTC 33074 |||||||| || || || ||||| || ||||| ||||||||||| || || || || Sbjct 134144604 CTGGTATTCGCCAACTTTCTTCTCGAAGAAGTTAGTCTTTCCTTCCAAAGAAATGTTCTC 134144545 Query 33075 CATGAAATCAAACGGATTGGT 33095 |||||| ||||| ||||| || Sbjct 134144544 CATGAAGTCAAATGGATTAGT 134144524 Score = 91.5 bits (100), Expect = 2e-13 Identities = 105/140 (75%), Gaps = 5/140 (4%) Strand=Plus/Minus Query 32957 TTTAAAAGTCAACATCTAAAGAAAAATGATTATCTT----CTTGAGACATAACTCCCATT 33012 ||||||| || ||| ||||| || || || ||| |||| ||||| || ||||| Sbjct 134156649 TTTAAAATTCGGCATTTAAAGTGAATTGCTTGTCTGTTGCCTTG-GACATGACACCCATC 134156591 Query 33013 TTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATTT 33072 || |||||||| | || || || || |||||||| ||||||||||| ||||| || Sbjct 134156590 TTCTGGTATTCGGCAACTTTCTTCTCAAAGAAATTAGTCTTTCCTTCCAAGGATATGTTC 134156531 Query 33073 TCCATGAAATCAAACGGATT 33092 ||||| |||||||| ||||| Sbjct 134156530 TCCATAAAATCAAATGGATT 134156511 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622894078177520