Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xenopus_20tropicalis_20[refseq_20GCF_5F000004195.3_202016-07-13] 6,822 sequences; 1,440,398,454 total letters Query= NC_007151.1 Length=149622 Score E Sequences producing significant alignments: (Bits) Value seq2 114 1e-20 seq1 95.1 1e-14 >seq2 Length=170201513 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 26768 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAA 26827 |||||| | ||||||||||| | ||||| || | |||||| | || |||| ||| Sbjct 31611591 AATGCAGATCTTTGTAAAAACCCTGACTGGCAAGACCATCACCTTGGAGGTAGAGCCAAG 31611650 Query 26828 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCA 26887 ||||| || ||| | |||||| |||||| ||||||||||| || ||||| || || Sbjct 31611651 TGACACAATAGAGAATGTCAAAGCAAAGATCCAAGACAAAGAAGGTATCCCTCCAGACCA 31611710 Query 26888 ACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAA 26947 || || | || | | |||||| || || ||||||| | | | | ||||| || Sbjct 31611711 GCAGAGGTTGATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACCCTTTCTGACTACAA 31611770 Query 26948 CATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 ||| ||||||||||| || | ||||| ||||| | || ||||| || Sbjct 31611771 CATCCAAAAAGAATCCACCCTGCATCTTGTCCTTCGTCTGAGAGGTGG 31611818 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 26768 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAA 26827 |||||| | ||||||||||| | ||||| || | |||||| | || |||| ||| Sbjct 31803157 AATGCAGATCTTTGTAAAAACCCTGACTGGCAAGACCATCACCCTGGAGGTAGAGCCAAG 31803216 Query 26828 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCA 26887 |||||||| ||| | || ||| |||||| ||||||||||| || || || || || Sbjct 31803217 TGACACCATTGAGAATGTTAAATCAAAGATCCAAGACAAAGAAGGTATCCCCCCAGACCA 31803276 Query 26888 ACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAA 26947 || || | || | | |||||| || || ||||||| | | | | | |||||||| Sbjct 31803277 GCAGAGGTTGATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACCCTTTGTGACTATAA 31803336 Query 26948 CATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 || || |||||||| ||| | ||||| ||||| | || ||||| || Sbjct 31803337 TATCCAGAAAGAATCAACTCTGCATCTTGTCCTTCGTCTGAGAGGTGG 31803384 Score = 113 bits (124), Expect = 4e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26768 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAA 26827 |||||| | ||||||||||| | ||||| || | |||||| | || |||| ||| Sbjct 31610907 AATGCAGATCTTTGTAAAAACCCTGACTGGCAAGACCATCACCCTGGAGGTAGAGCCAAG 31610966 Query 26828 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCA 26887 ||||| || ||| | |||||| |||||| ||||||||||| || ||||| || || Sbjct 31610967 TGACACAATAGAGAATGTCAAAGCAAAGATCCAAGACAAAGAAGGTATCCCTCCAGACCA 31611026 Query 26888 ACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAA 26947 || || | || | | |||||| || || ||||||| | | | | |||||||| Sbjct 31611027 GCAGAGGTTGATCTTTGCCGGCAAGCAGCTGGAAGATGGTCGCACACTTTCTGACTATAA 31611086 Query 26948 CATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGGAA 26997 || || |||||||| || | ||||| ||||| | || ||||| |||| Sbjct 31611087 TATCCAGAAAGAATCCACCCTGCATCTTGTCCTTCGTCTGAGAGGTGGAA 31611136 Score = 113 bits (124), Expect = 4e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26768 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAA 26827 |||||| | ||||||||||| | ||||| || | |||||| | || |||| ||| Sbjct 31611135 AATGCAGATCTTTGTAAAAACCCTGACTGGCAAGACCATCACCCTGGAGGTAGAGCCAAG 31611194 Query 26828 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCA 26887 ||||| || ||| | |||||| |||||| ||||||||||| || ||||| || || Sbjct 31611195 TGACACAATAGAGAATGTCAAAGCAAAGATCCAAGACAAAGAAGGTATCCCTCCAGACCA 31611254 Query 26888 ACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAA 26947 || || | || | | |||||| || || ||||||| | | | | ||||| || Sbjct 31611255 GCAGAGGTTGATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACCCTTTCTGACTACAA 31611314 Query 26948 CATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGGAA 26997 ||| || |||||||| || | ||||| ||||| | || ||||| |||| Sbjct 31611315 CATCCAGAAAGAATCCACCCTGCATCTTGTCCTTCGTCTGAGAGGTGGAA 31611364 Score = 113 bits (124), Expect = 4e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26768 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAA 26827 |||||| | ||||||||||| | ||||| || | |||||| | || |||| ||| Sbjct 31802929 AATGCAGATCTTTGTAAAAACCCTGACTGGCAAGACCATCACCCTGGAGGTAGAGCCAAG 31802988 Query 26828 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCA 26887 |||||||| ||| | || ||| |||||| ||||||||||| || ||||| || || Sbjct 31802989 TGACACCATAGAGAATGTTAAATCAAAGATCCAAGACAAAGAAGGTATCCCTCCAGACCA 31803048 Query 26888 ACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAA 26947 || || | || | | |||||| ||||| ||||||| | | | | | ||||| || Sbjct 31803049 GCAGAGGTTGATCTTTGCCGGCAAGCAACTAGAAGATGGCCGCACCCTTTGTGACTACAA 31803108 Query 26948 CATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGGAA 26997 || || || ||||| || | ||||| ||||| | || ||||| |||| Sbjct 31803109 TATCCAGAAGGAATCCACCCTGCATCTTGTCCTTCGTCTGAGAGGTGGAA 31803158 Score = 109 bits (120), Expect = 5e-19 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26768 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAA 26827 |||||| | ||||||||||| | ||||| || | |||||| | || |||| ||| Sbjct 31611363 AATGCAGATCTTTGTAAAAACCCTGACTGGCAAGACCATCACCCTGGAGGTAGAGCCAAG 31611422 Query 26828 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCA 26887 ||||| || ||| | |||||| |||||| ||||||||||| || ||||| || || Sbjct 31611423 TGACACAATAGAGAATGTCAAAGCAAAGATCCAAGACAAAGAAGGTATCCCTCCAGACCA 31611482 Query 26888 ACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAA 26947 || || | || | | |||||| || || ||||||| | | | |||||||| Sbjct 31611483 GCAGAGGTTGATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACACTTTCTGACTATAA 31611542 Query 26948 CATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGGAA 26997 || || |||||||| || | ||||| ||||| | || ||||| |||| Sbjct 31611543 TATCCAGAAAGAATCCACCCTGCATCTTGTCCTTCGTCTGAGAGGTGGAA 31611592 Score = 105 bits (116), Expect = 6e-18 Identities = 163/233 (70%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 26765 CAAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATC 26824 || |||||| | ||||| ||||| | ||||| ||| | || ||| | ||| | || | Sbjct 31610676 CAGAATGCAGATCTTTGTGAAAACCCTGACTGGCAAAACCATTACCTTGGAAGTTGAGCC 31610735 Query 26825 AAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGA 26884 || ||||| || ||| | |||||| |||||| ||||||||||| || || || || Sbjct 31610736 AAGTGACACAATAGAGAATGTCAAAGCAAAGATCCAAGACAAAGAAGGTATCCCCCCAGA 31610795 Query 26885 TCAACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTA 26944 || || || | || | | |||||| || || ||||||| | | | | ||||| Sbjct 31610796 CCAGCAGAGGTTGATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACCCTTTCTGACTA 31610855 Query 26945 TAACATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGGAA 26997 ||| || || |||||||| || | ||||| ||||| | || ||||| |||| Sbjct 31610856 TAATATCCAGAAAGAATCCACCCTGCATCTTGTCCTTCGTCTGAGAGGTGGAA 31610908 Score = 100 bits (110), Expect = 3e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26768 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAA 26827 |||||| | ||||||||||| | ||||| || | || || | || |||| ||| Sbjct 31802701 AATGCAGATCTTTGTAAAAACCCTGACTGGCAAGACCATTACTCTGGAGGTAGAGCCAAG 31802760 Query 26828 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCA 26887 ||||| || ||| | |||||| |||||| ||||||||||| || ||||| || || Sbjct 31802761 TGACACAATAGAGAATGTCAAAGGAAAGATCCAAGACAAAGAAGGTATCCCTCCAGACCA 31802820 Query 26888 ACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAA 26947 || || | || | | ||||| || || ||||||| | | | | | ||||| || Sbjct 31802821 GCAGAGGTTGATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGCACCCTTTGTGACTACAA 31802880 Query 26948 CATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGGAA 26997 ||| || |||||||| || | ||||| || || | || ||||| |||| Sbjct 31802881 CATCCAGAAAGAATCCACCCTGCATCTTGTACTTCGTCTGAGAGGTGGAA 31802930 Score = 93.3 bits (102), Expect = 4e-14 Identities = 173/250 (69%), Gaps = 7/250 (3%) Strand=Plus/Plus Query 26750 TACTTTTTAGTCAAACAAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCAC 26809 ||||| |||||| || |||| | ||||||||||| | ||||| || | ||||| Sbjct 31802458 TACTTCACAGTCAATCA---TGCAGATCTTTGTAAAAACCCTGACTGGCAAGACCATCAC 31802514 Query 26810 CATCGAATTAGAATCAAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGA 26869 | | || |||| ||| ||||| || ||| | |||||| |||||| |||||||| Sbjct 31802515 CCTGGAGGTAGAGCCAAGTGACACAATAGAGAATGTCAAAGCAAAGATCCAAGACAAAGA 31802574 Query 26870 AGGGATACCTCCCGATCAACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAG 26929 ||| || || || || || || || | || | | |||||| || || |||||| | Sbjct 31802575 AGGTATCCCCCCAGACCAGCAGAGGTTGATCTTTGCCGGCAAGCAGCTTGAAGATTGCCG 31802634 Query 26930 AAACGTC-AGC-GACTATAACATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTT 26987 | ||| || || || || || |||||||| || ||| | ||||| ||||| | || Sbjct 31802635 TA--GTCTTGCTGATTACAATATACAAAAAGAGTCAACTCTGCATCTTGTCCTTCGTCTG 31802692 Query 26988 AGAGGAGGAA 26997 || || |||| Sbjct 31802693 AGGGGTGGAA 31802702 >seq1 Length=194866763 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 26754 TTTTAGTCAAACAAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATC 26813 ||||| | | | || ||||| | ||||| ||||| | ||||| || | ||||| | Sbjct 151538839 TTTTATTTACAGAACATGCAGATATTTGTGAAAACGCTCACTGGGAAGACCATCACACTA 151538898 Query 26814 GAATTAGAATCAAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGG 26873 ||| | || ||| ||||| || || | || || || || || |||||||| Sbjct 151538899 GAAGTTGAGCCAAGTGACACTATTGAAAATGTGAAGGCTAAAATACAGGATAAAGAAGGC 151538958 Query 26874 ATACCTCCCGATCAACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAAC 26933 || ||||| ||||||||||| | || | | |||||||| || ||||||| ||| | Sbjct 151538959 ATTCCTCCAGATCAACAAAGGTTGATCTTTGCTGGCAAACAGCTGGAAGATGGCCGAACC 151539018 Query 26934 GTCAGCGACTATAACATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980 | ||||||||||| ||||| ||||| ||| | ||| |||| || Sbjct 151539019 TTATCAGACTATAACATCCAAAAGGAATCCACTCTGCATTTGGTTCT 151539065 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 |||||| | ||||| || || | ||||| ||| | || ||| | || | ||| ||| Sbjct 151539310 ATGCAAATATTTGTGAAGACCCTGACTGGTAAAACAATAACCCTTGAGGTTGAACCAAGT 151539369 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 |||||||| || | || ||| ||| ||| ||||||||||| || |||||||| || Sbjct 151539370 GACACCATTGAAAATGTAAAAGCAAAAATTCAAGACAAAGAAGGTATTCCTCCCGACCAG 151539429 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 || ||| | || | | ||| || || || ||||||| | | || || || ||| Sbjct 151539430 CAGAGATTGATCTTTGCCGGAAAGCAGCTGGAAGATGGCCGCACACTCTCTGATTACAAC 151539489 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 ||||| |||||||| || | || |||| || | || ||||| || Sbjct 151539490 ATTCAGAAAGAATCCACACTGCACTTGGTTCTTCGTCTCAGAGGTGG 151539536 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478621582063840