Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xenopus_20tropicalis_20[refseq_20GCF_5F000004195.3_202016-07-13] 6,822 sequences; 1,440,398,454 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq4 104 6e-17 seq6 98.7 3e-15 >seq4 Length=133473341 Score = 104 bits (114), Expect = 6e-17 Identities = 99/127 (78%), Gaps = 0/127 (0%) Strand=Plus/Plus Query 12829 CCAAATGTCAGAGAATCCATGTCTTCAGTTGCTGTGGCATACGCTTTTCCTGTTTTTACA 12888 ||||| ||||| | ||||||||||||||| |||| |||||| | || |||| ||| || Sbjct 14008649 CCAAAAGTCAGGGCATCCATGTCTTCAGTGGCTGCAGCATACACCTTCCCTGCTTTCACC 14008708 Query 12889 TATGCAGCACATGTAGCTTCGGCCTCACATGGTGCTTGAACGACCGGAATGCCCATTAGG 12948 | || |||||||| ||||| |||||||| ||||| | || |||| |||||| ||| Sbjct 14008709 AAGGCTGCACATGTGGCTTCAGCCTCACAAGGTGCATCCACATAAGGAACGCCCATCAGG 14008768 Query 12949 GTTAGCA 12955 || |||| Sbjct 14008769 GTAAGCA 14008775 >seq6 Length=135134832 Score = 98.7 bits (108), Expect = 3e-15 Identities = 121/163 (74%), Gaps = 2/163 (1%) Strand=Plus/Minus Query 111384 GGAAGTACAAATGCAAATGAACTTGCAGCAAAAAATGTAAAAATTTGGGATGGAAATGGA 111443 ||| |||| || |||| |||||| | |||||| |||||| || ||||||| |||||| Sbjct 93048397 GGATGTACCAACTCAAAAGAACTTTCTGCAAAAGGTGTAAAGATCTGGGATGCAAATGGC 93048338 Query 111444 TCACGTGACTTTCTAGATTCAGTTGGTCTTGTCGA-CAACGAAGAAGGTGATCTCGGACC 111502 || || || ||| | || || | || || | || || ||||| ||||| ||||| Sbjct 93048337 TCCCGGGAATTTTTGGACA-AGCAAGGATTCTCAAACAGAGAGGAAGGAGATCTTGGACC 93048279 Query 111503 AGTTTACGGATTTCAATGGCGCCACTTTGGTGCAGACTACAAA 111545 ||| || || ||||| ||| | ||||||||||| || |||||| Sbjct 93048278 AGTGTATGGCTTTCAGTGGAGGCACTTTGGTGCTGAATACAAA 93048236 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303239677934804