Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xenopus_20tropicalis_20[refseq_20GCF_5F000004195.3_202016-07-13] 6,822 sequences; 1,440,398,454 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq2 113 4e-20 seq1 111 1e-19 >seq2 Length=170201513 Score = 113 bits (124), Expect = 4e-20 Identities = 164/232 (71%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 23987 CAAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGC 24046 || |||||| | ||||| ||||| | ||||| ||| | |||||| | ||||| ||| | Sbjct 31610676 CAGAATGCAGATCTTTGTGAAAACCCTGACTGGCAAAACCATTACCTTGGAAGTTGAGCC 31610735 Query 24047 CAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGA 24106 | ||||| || ||| | |||||| |||||| ||||||||||| || || || || Sbjct 31610736 AAGTGACACAATAGAGAATGTCAAAGCAAAGATCCAAGACAAAGAAGGTATCCCCCCAGA 31610795 Query 24107 TCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTA 24166 || ||||| |||| | | ||||||||| || ||||||| | | | | | || || Sbjct 31610796 CCAGCAGAGGTTGATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACCCTTTCTGACTA 31610855 Query 24167 TAACATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGGA 24218 ||| || || |||||||| || | ||| | || | | ||||||| ||| Sbjct 31610856 TAATATCCAGAAAGAATCCACCCTGCATCTTGTCCTTCGTCTGAGAGGTGGA 31610907 Score = 109 bits (120), Expect = 5e-19 Identities = 143/198 (72%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 23990 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAA 24049 |||||| | ||||||||||| | ||||| || | || ||| | || || ||| | | Sbjct 31611591 AATGCAGATCTTTGTAAAAACCCTGACTGGCAAGACCATCACCTTGGAGGTAGAGCCAAG 31611650 Query 24050 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCA 24109 ||||| || ||| | |||||| |||||| ||||||||||| || ||||| || || Sbjct 31611651 TGACACAATAGAGAATGTCAAAGCAAAGATCCAAGACAAAGAAGGTATCCCTCCAGACCA 31611710 Query 24110 ACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAA 24169 ||||| |||| | | ||||||||| || ||||||| | | | | | || || || Sbjct 31611711 GCAGAGGTTGATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACCCTTTCTGACTACAA 31611770 Query 24170 CATTCAAAAAGAATCTAC 24187 ||| ||||||||||| || Sbjct 31611771 CATCCAAAAAGAATCCAC 31611788 Score = 107 bits (118), Expect = 2e-18 Identities = 161/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 23990 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAA 24049 |||||| | ||||||||||| | ||||| || | || ||| | || || ||| | | Sbjct 31611135 AATGCAGATCTTTGTAAAAACCCTGACTGGCAAGACCATCACCCTGGAGGTAGAGCCAAG 31611194 Query 24050 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCA 24109 ||||| || ||| | |||||| |||||| ||||||||||| || ||||| || || Sbjct 31611195 TGACACAATAGAGAATGTCAAAGCAAAGATCCAAGACAAAGAAGGTATCCCTCCAGACCA 31611254 Query 24110 ACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAA 24169 ||||| |||| | | ||||||||| || ||||||| | | | | | || || || Sbjct 31611255 GCAGAGGTTGATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACCCTTTCTGACTACAA 31611314 Query 24170 CATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGGA 24218 ||| || |||||||| || | ||| | || | | ||||||| ||| Sbjct 31611315 CATCCAGAAAGAATCCACCCTGCATCTTGTCCTTCGTCTGAGAGGTGGA 31611363 Score = 107 bits (118), Expect = 2e-18 Identities = 161/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 23990 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAA 24049 |||||| | ||||||||||| | ||||| || | ||||| | || || ||| | | Sbjct 31802701 AATGCAGATCTTTGTAAAAACCCTGACTGGCAAGACCATTACTCTGGAGGTAGAGCCAAG 31802760 Query 24050 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCA 24109 ||||| || ||| | |||||| |||||| ||||||||||| || ||||| || || Sbjct 31802761 TGACACAATAGAGAATGTCAAAGGAAAGATCCAAGACAAAGAAGGTATCCCTCCAGACCA 31802820 Query 24110 ACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAA 24169 ||||| |||| | | |||||||| || ||||||| | | | | | | || || || Sbjct 31802821 GCAGAGGTTGATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGCACCCTTTGTGACTACAA 31802880 Query 24170 CATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGGA 24218 ||| || |||||||| || | ||| | || | | ||||||| ||| Sbjct 31802881 CATCCAGAAAGAATCCACCCTGCATCTTGTACTTCGTCTGAGAGGTGGA 31802929 Score = 107 bits (118), Expect = 2e-18 Identities = 161/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 23990 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAA 24049 |||||| | ||||||||||| | ||||| || | || ||| | || || ||| | | Sbjct 31802929 AATGCAGATCTTTGTAAAAACCCTGACTGGCAAGACCATCACCCTGGAGGTAGAGCCAAG 31802988 Query 24050 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCA 24109 |||||||| ||| | || ||| |||||| ||||||||||| || ||||| || || Sbjct 31802989 TGACACCATAGAGAATGTTAAATCAAAGATCCAAGACAAAGAAGGTATCCCTCCAGACCA 31803048 Query 24110 ACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAA 24169 ||||| |||| | | |||||||||||| ||||||| | | | | | | || || || Sbjct 31803049 GCAGAGGTTGATCTTTGCCGGCAAGCAACTAGAAGATGGCCGCACCCTTTGTGACTACAA 31803108 Query 24170 CATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGGA 24218 || || || ||||| || | ||| | || | | ||||||| ||| Sbjct 31803109 TATCCAGAAGGAATCCACCCTGCATCTTGTCCTTCGTCTGAGAGGTGGA 31803157 Score = 105 bits (116), Expect = 6e-18 Identities = 142/198 (72%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 23990 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAA 24049 |||||| | ||||||||||| | ||||| || | || ||| | || || ||| | | Sbjct 31803157 AATGCAGATCTTTGTAAAAACCCTGACTGGCAAGACCATCACCCTGGAGGTAGAGCCAAG 31803216 Query 24050 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCA 24109 |||||||| ||| | || ||| |||||| ||||||||||| || || || || || Sbjct 31803217 TGACACCATTGAGAATGTTAAATCAAAGATCCAAGACAAAGAAGGTATCCCCCCAGACCA 31803276 Query 24110 ACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAA 24169 ||||| |||| | | ||||||||| || ||||||| | | | | | | || ||||| Sbjct 31803277 GCAGAGGTTGATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACCCTTTGTGACTATAA 31803336 Query 24170 CATTCAAAAAGAATCTAC 24187 || || |||||||| || Sbjct 31803337 TATCCAGAAAGAATCAAC 31803354 Score = 102 bits (112), Expect = 7e-17 Identities = 160/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 23990 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAA 24049 |||||| | ||||||||||| | ||||| || | || ||| | || || ||| | | Sbjct 31611363 AATGCAGATCTTTGTAAAAACCCTGACTGGCAAGACCATCACCCTGGAGGTAGAGCCAAG 31611422 Query 24050 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCA 24109 ||||| || ||| | |||||| |||||| ||||||||||| || ||||| || || Sbjct 31611423 TGACACAATAGAGAATGTCAAAGCAAAGATCCAAGACAAAGAAGGTATCCCTCCAGACCA 31611482 Query 24110 ACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAA 24169 ||||| |||| | | ||||||||| || ||||||| | | | | || ||||| Sbjct 31611483 GCAGAGGTTGATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACACTTTCTGACTATAA 31611542 Query 24170 CATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGGA 24218 || || |||||||| || | ||| | || | | ||||||| ||| Sbjct 31611543 TATCCAGAAAGAATCCACCCTGCATCTTGTCCTTCGTCTGAGAGGTGGA 31611591 Score = 98.7 bits (108), Expect = 9e-16 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 23990 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAA 24049 |||||| | ||||||||||| | ||||| || | || ||| | || || ||| | | Sbjct 31610907 AATGCAGATCTTTGTAAAAACCCTGACTGGCAAGACCATCACCCTGGAGGTAGAGCCAAG 31610966 Query 24050 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCA 24109 ||||| || ||| | |||||| |||||| ||||||||||| || ||||| || || Sbjct 31610967 TGACACAATAGAGAATGTCAAAGCAAAGATCCAAGACAAAGAAGGTATCCCTCCAGACCA 31611026 Query 24110 ACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAA 24169 ||||| |||| | | ||||||||| || ||||||| | | | || ||||| Sbjct 31611027 GCAGAGGTTGATCTTTGCCGGCAAGCAGCTGGAAGATGGTCGCACACTTTCTGACTATAA 31611086 Query 24170 CATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGGA 24218 || || |||||||| || | ||| | || | | ||||||| ||| Sbjct 31611087 TATCCAGAAAGAATCCACCCTGCATCTTGTCCTTCGTCTGAGAGGTGGA 31611135 Score = 93.3 bits (102), Expect = 4e-14 Identities = 142/199 (71%), Gaps = 4/199 (2%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | ||||||||||| | ||||| || | || ||| | || || ||| | | Sbjct 31802474 ATGCAGATCTTTGTAAAAACCCTGACTGGCAAGACCATCACCCTGGAGGTAGAGCCAAGT 31802533 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||| || ||| | |||||| |||||| ||||||||||| || || || || || Sbjct 31802534 GACACAATAGAGAATGTCAAAGCAAAGATCCAAGACAAAGAAGGTATCCCCCCAGACCAG 31802593 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTC-AGC-GATTATA 24168 ||||| |||| | | ||||||||| || |||||| | | | ||| || ||||| | Sbjct 31802594 CAGAGGTTGATCTTTGCCGGCAAGCAGCTTGAAGATTGCCGTA--GTCTTGCTGATTACA 31802651 Query 24169 ACATTCAAAAAGAATCTAC 24187 | || |||||||| || || Sbjct 31802652 ATATACAAAAAGAGTCAAC 31802670 >seq1 Length=194866763 Score = 111 bits (122), Expect = 1e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | ||||| || || | ||||| ||| | || ||| | || || || | | Sbjct 151539310 ATGCAAATATTTGTGAAGACCCTGACTGGTAAAACAATAACCCTTGAGGTTGAACCAAGT 151539369 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 |||||||| || | || ||| ||| ||| ||||||||||| || |||||||| || Sbjct 151539370 GACACCATTGAAAATGTAAAAGCAAAAATTCAAGACAAAGAAGGTATTCCTCCCGACCAG 151539429 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 |||||| |||| | | ||| ||||| || ||||||| | | | || ||||| ||| Sbjct 151539430 CAGAGATTGATCTTTGCCGGAAAGCAGCTGGAAGATGGCCGCACACTCTCTGATTACAAC 151539489 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGT 24199 ||||| |||||||| ||| | || || || Sbjct 151539490 ATTCAGAAAGAATCCACACTGCACTTGGT 151539518 Score = 91.5 bits (100), Expect = 1e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 23988 AAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCC 24047 || ||||| | ||||| ||||| | ||||| || | || || | ||||| ||| | Sbjct 151538851 AACATGCAGATATTTGTGAAAACGCTCACTGGGAAGACCATCACACTAGAAGTTGAGCCA 151538910 Query 24048 AACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGAT 24107 | ||||| || || | || || || || || ||||||||||| ||||| ||| Sbjct 151538911 AGTGACACTATTGAAAATGTGAAGGCTAAAATACAGGATAAAGAAGGCATTCCTCCAGAT 151538970 Query 24108 CAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTAT 24167 ||||| || |||| | | ||||| || || ||||||| | ||| | | || ||| Sbjct 151538971 CAACAAAGGTTGATCTTTGCTGGCAAACAGCTGGAAGATGGCCGAACCTTATCAGACTAT 151539030 Query 24168 AACATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217 ||||| ||||| ||||| || | ||||| || | | |||||||| || Sbjct 151539031 AACATCCAAAAGGAATCCACTCTGCATTTGGTTCTCCGTTTGAGAGGTGG 151539080 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | ||||| || || | ||||| || | |||||| | || || ||| | | Sbjct 151539082 ATGCAGATATTTGTGAAGACCCTGACTGGGAAGACCATTACCCTTGAGGTTGAGCCAAGT 151539141 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 || || || ||| | || || ||| || ||||| |||||||| || || || || Sbjct 151539142 GATACTATTGAGAATGTAAAGGCAAAAATCCAAGACAAGGAAGGCATTCCCCCTGACCAG 151539201 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 |||||| |||||| | |||||||| || ||||||| | | | || || ||| Sbjct 151539202 CAGAGATTGATTTTTGCTGGCAAGCAGCTGGAAGATGGTCGCACTCTTTCTGACTACAAC 151539261 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGT 24199 |||||||||||||| || | || ||||| Sbjct 151539262 ATTCAAAAAGAATCCACCTTGCACTTAGT 151539290 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429900253777410