Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xenopus_20tropicalis_20[refseq_20GCF_5F000004195.3_202016-07-13] 6,822 sequences; 1,440,398,454 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq2 116 3e-21 seq1 104 2e-17 >seq2 Length=170201513 Score = 116 bits (128), Expect = 3e-21 Identities = 174/244 (71%), Gaps = 6/244 (2%) Strand=Plus/Minus Query 130992 TCACTTTCACCATGAGCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTG 131051 ||||||| || | ||||| | || ||| || || | ||| | ||| || || ||||| Sbjct 31611830 TCACTTTAACAA----CCACCTCTCAGACGAAGGACAAGATGCAGGGTGGATTCTTTTTG 31611775 Query 131052 AATGTTGTAATCGCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACG 131111 |||||||| || | |||||| || || ||||||||||| || |||| || | Sbjct 31611774 GATGTTGTAGTCAGAAAGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATCAACCT 31611715 Query 131112 CTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGTGATTTTCTGC-TTGAGCTGCTCCACAG 131170 ||||||||| |||||||| ||||||||||| ||| || ||| |||| | ||| | | Sbjct 31611714 CTGCTGGTCTGGAGGGATACCTTCTTTGTCTTGGATCTT-TGCTTTGACATTCTCTATTG 31611656 Query 131171 TATCGGTGGACTCGATGTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCT 131230 | || | | ||| | || | ||| | ||| || || || || |||||||| || |||| Sbjct 31611655 TGTCACTTGGCTCTACCTCCAAGGTGATGGTCTTGCCAGTCAGGGTTTTTACAAAGATCT 31611596 Query 131231 GCAT 131234 |||| Sbjct 31611595 GCAT 31611592 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| | || ||| || || | ||| | ||| || || || || |||||||| || | Sbjct 31802928 CCACCTCTCAGACGAAGTACAAGATGCAGGGTGGATTCTTTCTGGATGTTGTAGTCACAA 31802869 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | |||||| || || ||||||||||| || |||| || | ||||||||| |||||| Sbjct 31802868 AGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAACCTCTGCTGGTCTGGAGGG 31802809 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || ||||||||||| ||| || |||| | ||| | || || | | ||| | Sbjct 31802808 ATACCTTCTTTGTCTTGGATCTTTCCTTTGACATTCTCTATTGTGTCACTTGGCTCTACC 31802749 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | |||| ||| || || || || |||||||| || |||||||| Sbjct 31802748 TCCAGAGTAATGGTCTTGCCAGTCAGGGTTTTTACAAAGATCTGCAT 31802702 Score = 111 bits (122), Expect = 1e-19 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| | || ||| || || | ||| | ||| || || || || |||||||| || Sbjct 31611362 CCACCTCTCAGACGAAGGACAAGATGCAGGGTGGATTCTTTCTGGATGTTGTAGTCAGAA 31611303 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | |||||| || || ||||||||||| || |||| || | ||||||||| |||||| Sbjct 31611302 AGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATCAACCTCTGCTGGTCTGGAGGG 31611243 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGC-TTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 || ||||||||||| ||| || ||| |||| | ||| | || || | | ||| | Sbjct 31611242 ATACCTTCTTTGTCTTGGATCTT-TGCTTTGACATTCTCTATTGTGTCACTTGGCTCTAC 31611184 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | ||| | ||| || || || || |||||||| || |||||||| Sbjct 31611183 CTCCAGGGTGATGGTCTTGCCAGTCAGGGTTTTTACAAAGATCTGCAT 31611136 Score = 111 bits (122), Expect = 1e-19 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| | || ||| || || | ||| | ||| || ||||| || || ||||| || | Sbjct 31803156 CCACCTCTCAGACGAAGGACAAGATGCAGGGTGGATTCCTTCTGGATATTGTAGTCACAA 31803097 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | |||||| || ||||| |||||||| || |||| || | ||||||||| |||||| Sbjct 31803096 AGGGTGCGGCCATCTTCTAGTTGCTTGCCGGCAAAGATCAACCTCTGCTGGTCTGGAGGG 31803037 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGC-TGCTCCACAGTATCGGTGGACTCGAT 131186 || ||||||||||| ||| || || || | | | ||| | || || | | ||| | Sbjct 31803036 ATACCTTCTTTGTCTTGGATCTT-TGATTTAACATTCTCTATGGTGTCACTTGGCTCTAC 31802978 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | ||| | ||| || || || || |||||||| || |||||||| Sbjct 31802977 CTCCAGGGTGATGGTCTTGCCAGTCAGGGTTTTTACAAAGATCTGCAT 31802930 Score = 105 bits (116), Expect = 6e-18 Identities = 163/230 (71%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| | || ||| || || | ||| | || ||||| ||||| || |||||||| Sbjct 31802700 CCACCCCTCAGACGAAGGACAAGATGCAGAGTTGACTCTTTTTGTATATTGTAATCAGCA 31802641 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | | || | || || ||||||||||| || |||| || | ||||||||| || ||| Sbjct 31802640 AGACTACGGCAATCTTCAAGCTGCTTGCCGGCAAAGATCAACCTCTGCTGGTCTGGGGGG 31802581 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGC-TTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 || ||||||||||| ||| || ||| |||| | ||| | || || | | ||| | Sbjct 31802580 ATACCTTCTTTGTCTTGGATCTT-TGCTTTGACATTCTCTATTGTGTCACTTGGCTCTAC 31802522 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATGA 131236 || | ||| | ||| || || || || |||||||| || |||||||||| Sbjct 31802521 CTCCAGGGTGATGGTCTTGCCAGTCAGGGTTTTTACAAAGATCTGCATGA 31802472 Score = 102 bits (112), Expect = 8e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| | || ||| || || | ||| | ||| || || || || || || || || Sbjct 31610906 CCACCTCTCAGACGAAGGACAAGATGCAGGGTGGATTCTTTCTGGATATTATAGTCAGAA 31610847 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | |||||| || || ||||||||||| || |||| || | ||||||||| || ||| Sbjct 31610846 AGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATCAACCTCTGCTGGTCTGGGGGG 31610787 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGC-TTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 || ||||||||||| ||| || ||| |||| | ||| | || || | | ||| | Sbjct 31610786 ATACCTTCTTTGTCTTGGATCTT-TGCTTTGACATTCTCTATTGTGTCACTTGGCTCAAC 31610728 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | ||||| |||||| || || || ||||| || || |||||||| Sbjct 31610727 TTCCAAGGTAATGGTTTTGCCAGTCAGGGTTTTCACAAAGATCTGCAT 31610680 Score = 98.7 bits (108), Expect = 9e-16 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| | || ||| || || | ||| | ||| || || || || || || || || Sbjct 31611134 CCACCTCTCAGACGAAGGACAAGATGCAGGGTGGATTCTTTCTGGATATTATAGTCAGAA 31611075 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||||| || || ||||||||||| || |||| || | ||||||||| |||||| Sbjct 31611074 AGTGTGCGACCATCTTCCAGCTGCTTGCCGGCAAAGATCAACCTCTGCTGGTCTGGAGGG 31611015 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGC-TTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 || ||||||||||| ||| || ||| |||| | ||| | || || | | ||| | Sbjct 31611014 ATACCTTCTTTGTCTTGGATCTT-TGCTTTGACATTCTCTATTGTGTCACTTGGCTCTAC 31610956 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | ||| | ||| || || || || |||||||| || |||||||| Sbjct 31610955 CTCCAGGGTGATGGTCTTGCCAGTCAGGGTTTTTACAAAGATCTGCAT 31610908 Score = 98.7 bits (108), Expect = 9e-16 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| | || ||| || || | ||| | ||| || || || || || || || || Sbjct 31611590 CCACCTCTCAGACGAAGGACAAGATGCAGGGTGGATTCTTTCTGGATATTATAGTCAGAA 31611531 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||||| || || ||||||||||| || |||| || | ||||||||| |||||| Sbjct 31611530 AGTGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATCAACCTCTGCTGGTCTGGAGGG 31611471 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGC-TTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 || ||||||||||| ||| || ||| |||| | ||| | || || | | ||| | Sbjct 31611470 ATACCTTCTTTGTCTTGGATCTT-TGCTTTGACATTCTCTATTGTGTCACTTGGCTCTAC 31611412 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | ||| | ||| || || || || |||||||| || |||||||| Sbjct 31611411 CTCCAGGGTGATGGTCTTGCCAGTCAGGGTTTTTACAAAGATCTGCAT 31611364 Score = 96.9 bits (106), Expect = 3e-15 Identities = 161/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 131006 AGCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGC 131065 ||||||| | || ||| || || | ||| | || || || || || || || || || | Sbjct 31803386 AGCCACCTCTCAGACGAAGGACAAGATGCAGAGTTGATTCTTTCTGGATATTATAGTCAC 31803327 Query 131066 TCATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAG 131125 | |||||| || || ||||||||||| || |||| || | ||||||||| || | Sbjct 31803326 AAAGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATCAACCTCTGCTGGTCTGGGG 31803267 Query 131126 GGATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGC-TGCTCCACAGTATCGGTGGACTCG 131184 |||| ||||||||||| ||| || || || | | | ||| | || || | | ||| Sbjct 31803266 GGATACCTTCTTTGTCTTGGATCTT-TGATTTAACATTCTCAATGGTGTCACTTGGCTCT 31803208 Query 131185 ATGTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 | || | ||| | ||| || || || || |||||||| || |||||||| Sbjct 31803207 ACCTCCAGGGTGATGGTCTTGCCAGTCAGGGTTTTTACAAAGATCTGCAT 31803158 >seq1 Length=194866763 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| | | ||| || ||||| || | ||| || || |||||||||||||| || Sbjct 151539308 CCACCTCTGAGACGAAGAACTAAGTGCAAGGTGGATTCTTTTTGAATGTTGTAGTCAGAA 151539249 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||||| || || ||||||||||| || | || || | ||||||||| || || Sbjct 151539248 AGAGTGCGACCATCTTCCAGCTGCTTGCCAGCAAAAATCAATCTCTGCTGGTCAGGGGGA 151539189 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || ||||| ||||| |||||| ||| | | ||| | |||||| | | ||| | Sbjct 151539188 ATGCCTTCCTTGTCTTGGATTTTTGCCTTTACATTCTCAATAGTATCACTTGGCTCAACC 151539129 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | ||||| ||| || || || || || || || || |||||||| Sbjct 151539128 TCAAGGGTAATGGTCTTCCCAGTCAGGGTCTTCACAAATATCTGCAT 151539082 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| | |||||| || || | || | ||| || || || |||||||||||||| Sbjct 151539764 CCACCCCTCAAACGAAGGACCAGGTGCAGGGTGGATTCTTTCTGAATGTTGTAATCAGAG 151539705 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||||| || || |||||||||||||| |||| || | ||||||||| || || Sbjct 151539704 AGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATCAACCTCTGCTGGTCAGGGGGA 151539645 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || ||||| || || |||||| ||| | | ||| | || || ||| ||| | Sbjct 151539644 ATGCCTTCCTTATCTTGGATTTTTGCCTTTACATTCTCAATTGTGTCACTGGGCTCAACT 151539585 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | |||| ||| || || || || || || || ||||||||||| Sbjct 151539584 TCAAGAGTAATGGTCTTCCCAGTCAGGGTCTTGACAAAAATCTGCAT 151539538 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 471972549108480